Zepeng (Phoenix) Mu

This error is not related to ArchR, in your code you specified `groupRNA` twice: ```r groupRNA = "celltype", # here groupList = groupList, addToArrow = FALSE, groupRNA = "BioClassification", #...

check you groupList

I agree that when the intermediate file is there, snakemake does not need to check whether the original input file is there. In my case, I was trying to forcerun...

I think I have a similar issue. I am trying to generate a list of dataframes and rbind them: ```r out % Reduce("rbind", .) ``` The problem is when the...

I'm also having error with loading cellassign or running `tf_config()` is rstudio but not R console. My solution is to change the python interpreter in the rstudio preference to the...

sorry it's been so long I totally cannot recall what I did.

I tried running without VCF before, and there was also a memory issue, but not sure if it's the same reason as this one. Right now I'm running with `nDonor=2`...

I have about 11K cells with 1.9 million SNPs from 2 samples. I have also used 60K cells with 2.7 million SNPs from 4 samples and there was no memory...

So changing this line 212 `fd = ln.strip().split()` to `split('\t')` seem to solve my problem. Although I do not need to change the code for reading the header line.

Yeah, I actually also thought about this, this seems to be the only way. Thanks!