Doesn't work for Nanopore

[monsanto-pinheiro]

Your code doesn't work for Nanopore, only creates the stats (HTML). You have all code of Json and Filtering commented in the TGSProcessor.cpp file.

[ZekunYin]

Hi, I'm sorry that RabbitQC only offers basic quality control functions for nanopore and pacbio sequencing data. For 3GS data RabbitQC works in the same way as NanoQC. Could you please describe your needs when processing the nanopore sequencing data? We may add some function modules to RabbitQC in next version.

[monsanto-pinheiro]

Hi, Sorry, but can you enumerate the "basic quality control functions" that RabbitQC offers to nanopore and pacbio? Well, you can add JSON report and filtering for the next version.

[ZekunYin]

Hi, The "basic quality control functions" for 3GS data are based on NanoQC. RabbitQC only reports the statistics information of the 3GS data as showed in the html report file. If there is other preprocessing operation you would like to perform on 3GS data, please inform me. I will see what I can do. And thanks for the feedback. Best, Zekun