DeePiCt
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ZauggGroup
Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
Installation instructions do not give specific versions for: pandas pytorch-gpu torchvision These should be specified as tested and known to be working.
The deploy_cluster.sh scripts have hardcoded paths to the src directory required for running the snakemake job. They also have values for time and memory and a few other assumptions like...
This pull request contains 2 Dockerfile files to construct 2 Docker images. One that will work for the 2d_cnn scripts using Ubuntu 18.04 and CUDA 10.0 and another for the...
When I run the cell 1.2 from the DeePiCt 2D Google Colab notebook, the following error appears: ``` Building wheels for collected packages: h5py error: subprocess-exited-with-error × python setup.py bdist_wheel...
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Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).