Yuzhang0102 issues

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                                            Yuzhang0102

Error about demux_isoseq_with_genome.py

Hi, I used the same pipeline with the @kmattioli to process the isoseq data, but i met an error when running demux_isoseq_with_genome.py. The closed issue is in the link https://github.com/Magdoll/cDNA_Cupcake/issues/167#issue-947981042...

how to reserve the U&P reads of alignment bam file?

Hi Mike, I used ShortStack4 aligned my sRNA reads to genome, and I got the alignment_details.tsv and many bam files. And I have annotation file predicted by other softwares, so...