CAR-LASSO

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Errors:decomposition failed and matrix is singular or not positive definite

1

Two errors that I've found when running the package are that: 1. **Error: chol(): decomposition failed** ```` CARlasso(Ga0485157_metabat1.059+Ga0485167_maxbin.109+ Ga0485162_maxbin.089+Ga0485161_maxbin.110+Ga0485161_maxbin.075+Ga0485157_metabat1.036+Ga0485165_metabat2_ours.012_sub+Ga0485169_maxbin.201_sub+Ga0485172_maxbin.081_sub+Ga0485168_maxbin.153+ Ga0485172_metabat2_ours.083+ Ga0485162_maxbin.023+ Ga0485160_maxbin.092+ Ga0485158_metabat2_jgi.024+ Ga0485162_metabat1.001+**Ga0485163_metabat1.131**~ depth+wtemp+sp_cond+chlor_rfu+phyco_rfu+fdom_rfu+turb_fnu+do_sat+do_raw+ph, data = data_use, link="log",adaptive =...

Sophiayangg

warning and errors: matrix is not symmetric, arguments imply differing number of rows: 11, 9

5

I am getting the following warnings and errors. `CARlasso(Didymellaceae + `Cladosporium ramotenellum` + `Didymella sp.`+ Didymosphaeriaceae + Didymellaceae.1 + `Gibberella intricans` + `Colletotrichum spaethianum` + `Alternaria alternata` + `Coniothyrium sp.`...

connor-morozumi

bGlasso malfunctions with probit link

2

I've tried to run `bGlasso` with the same binary dataset as `CARlasso` (sans predictors). It runs fine with `CARlasso` and it appears to also be running fine with `bGlasso` when...

kjmtaylor22

For higher dimension cases the formula can be too long to approach, we should have CARlasso allowing matrix input.

YunyiShen

This can be done by users themselves but can be better done as a function since we generated the network object during `plot` methods anyway.

YunyiShen