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                                            Yunxia-li

core dumped: terminate called after throwing an instance of 'std::invalid_argument'

Hi： I first ran this, And it was successful. `merge_wrapper.py Mtctgs-zhu2-uniq.fasta YYL.pass.fa@fmlrcor@mashmap2-idseq` Then I tried this step by step: 1, `nucmer -l 100 -prefix YYL_Mtctgs-zhu2-uniq Mtctgs-zhu2-uniq.fasta YYL.pass.fa@fmlrcor@[email protected] `, result file:...

Velvet contig: WARN japsa.tools.bio.np.NPScarfCmd - Not found any legal SPAdes output folder,

Thanks for your reply. I use the contig and the pacbio_reads to get the bam file.It is like that: head -10 : > @SQ SN:NODE_10906_length_1007_cov_71.668320 LN:1077 @SQ SN:NODE_6355_length_946_cov_48.813953 LN:1016 @SQ...

Velvet contig: WARN japsa.tools.bio.np.NPScarfCmd - Not found any legal SPAdes output folder,

Well, I checked my contig.fasta, and I found some duplicate id. After remove these duplicate id, and rerun these commands, and it was successful. Thanks for your kindly reply.