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Published 20 hours ago • verified publisher icon YuLab-SMU

unused argument when create_kegg_db

Open hahia opened this issue 1 year ago • 9 comments

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hahia avatar Mar 20 '23 03:03 hahia

It works well with me. Please make sure you are using the latest version of clusterProfiler and createKEGGdb. image

huerqiang avatar Mar 20 '23 17:03 huerqiang

i have the same problem

phil622 avatar Mar 23 '23 01:03 phil622

@phil622 Please make sure you are using the latest version of therse packagers.

huerqiang avatar Mar 23 '23 04:03 huerqiang

I have the same problem. And I have install the latest version of clusterProfiler and createKEGGdb.

ZhangZhenYang-zzy avatar Mar 28 '23 05:03 ZhangZhenYang-zzy

7281679981079_ pic when run create_kegg_db('hsa'), it report "unused argument (species)" in function clusterProfiler:::kegg_list. And I found that clusterProfiler:::kegg_list will work without species given.

ZhangZhenYang-zzy avatar Mar 28 '23 05:03 ZhangZhenYang-zzy

image I have the same problem.

RickeySun avatar Mar 29 '23 08:03 RickeySun

update the R version had solved my problem

phil622 avatar Mar 29 '23 08:03 phil622

remotes::install_github("YuLab-SMU/clusterProfiler") had solved my problem

zzzsssyyy1995 avatar Apr 06 '23 01:04 zzzsssyyy1995

The problem has been solved!

ZhangZhenYang-zzy avatar Apr 06 '23 02:04 ZhangZhenYang-zzy