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`simplify` for output from `clusterProfiler::GSEA`?

Open denvercal1234GitHub opened this issue 1 year ago • 3 comments

Hi there,

Thanks for the package.

I was wondering if there is an implementation of simplify() for the output from clusterProfiler::GSEA?

Because when I attempted it, it returned an error below.

Error in .local(x, ...) : 
  simplify only applied to output from gseGO and enrichGO...

Related https://github.com/YuLab-SMU/clusterProfiler/issues/162

denvercal1234GitHub avatar Jan 20 '25 17:01 denvercal1234GitHub

Which part of MSigDB are you using? If it is Hallmarks, then the redundancy is already eliminated by design.

DarioS avatar Jan 28 '25 04:01 DarioS

I did GO:BP and GO:MF.

denvercal1234GitHub avatar Jan 28 '25 17:01 denvercal1234GitHub

Need this also :(

fistorres avatar Apr 04 '25 16:04 fistorres