clusterProfiler
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something wrong of setReadable
老师您好 在运行setReadable时遇到了报错现象
代码如下:
GSEA_KEGG.R1<-DOSE::setReadable(GSEA_KEGG,OrgDb = 'org.Hs.eg.db',keyType = 'ENTREZID') 报错如下: 错误: near "7006": syntax error
在此处可以正常运行:
KEGG<-enrichKEGG(En_id, #KEGG在线富集分析 organism=KEGG_database, pvalueCutoff = 0.05, qvalueCutoff = 0.05) KEGG<-DOSE::setReadable(KEGG,OrgDb` = "org.Hs.eg.db",keyType = 'ENTREZID') #id转回symbol
在此处不能正常运行:
GSEA_KEGG<-gseKEGG( GSEAgenelist.KEGG, organism = 'hsa', pvalueCutoff = 0.05, verbose = T, ) GSEA_KEGG.R1<-DOSE::setReadable(GSEA_KEGG,OrgDb = 'org.Hs.eg.db',keyType = 'ENTREZID') #id转回symbol