clusterProfiler running enrichGO() function on MSigDB gene set

running enrichGO() function on MSigDB gene set

Open kerenzhou062 opened this issue 2 years ago • 2 comments

Hi YuLab members,

Are there any ways to run enrichGO() function on MSigDB gene set (like HALLMARK gene set)?

Best,

Keren

Sep 19 '22 21:09 kerenzhou062

You should use enricher(), see https://yulab-smu.top/biomedical-knowledge-mining-book/universal-api.html#msigdb-analysis

Sep 20 '22 04:09 huerqiang

You should use enricher(), see https://yulab-smu.top/biomedical-knowledge-mining-book/universal-api.html#msigdb-analysis

Thank you! I've tried enricher() and works fine!

Best,

Keren

Sep 20 '22 04:09 kerenzhou062