GSEA: Error: BiocParallel errors 0 remote errors, element index: 372 unevaluated and other errors first remote error: In addition: Warning message: In preparePathwaysAndStats(pathways, stats, minSize, maxSize, gseaParam, : All values in the stats vector are greater than zero and scoreType is "std", maybe you should switch to scoreType = "pos".

[parkjooyoung99]

Describe your issue

is there any way to give scoreType='pos' in clusterProfiler,,?

Ask in the right place

• [ ] for bugs or feature requests, post here (github issue)
• [ ] for questions, please post to Bioconductor or Biostars with the tag clusterProfiler

[Xingsongli]

I got the same issue, have you got the sollution?

[huerqiang]

@Xingsongli There should be a problem with your data. Please provide your data so I can adjust and test it for you.

[tyleryasaka]

I just wanted to post here for anyone else that runs into this issue. This was a very weird error for me because it came from code that previously was working without any changes. I figured it had to be some weird runtime issue with the BiocParallel dependency. Restarted my computer and it went away.