clusterProfiler
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ClusterProfiler and org.Hs.egPROSITE error
I am trying to incorporate clusterProfiler into a package I am building but when I can enrichGO()
from within the function I get this error
Loading required package: org.Hs.eg.db Failed with error: ‘org.Hs.egPROSITE is defunct. Please use select() if you need access to PFAM or PROSITE accessions.’
I still get the results successfully but I am wondering if there is a way to address or remove this error either by limiting what I import from clusterProfiler or from org.Hs.eg.db? Currently I only import enrichGO()
from clusterProfiler but I am importing the whole org.Hs.eg.db package as I am not sure if the function will work without doing that.
Thanks!