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ClusterProfiler and org.Hs.egPROSITE error

Open sunnyjones5 opened this issue 3 years ago • 0 comments

I am trying to incorporate clusterProfiler into a package I am building but when I can enrichGO() from within the function I get this error

Loading required package: org.Hs.eg.db Failed with error: ‘org.Hs.egPROSITE is defunct. Please use select() if you need access to PFAM or PROSITE accessions.’

I still get the results successfully but I am wondering if there is a way to address or remove this error either by limiting what I import from clusterProfiler or from org.Hs.eg.db? Currently I only import enrichGO() from clusterProfiler but I am importing the whole org.Hs.eg.db package as I am not sure if the function will work without doing that.

Thanks!

sunnyjones5 avatar Feb 24 '22 19:02 sunnyjones5