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Why do enrichGo and enrichKEGG have qvaluecutoff but not gseGO and gseKEGG?

Open NeginValizadegan opened this issue 3 years ago • 1 comments

I am wondering why qvaluecutoff option is only set for the ORA and not the GSEA in this package.

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NeginValizadegan avatar Aug 31 '21 21:08 NeginValizadegan

I would also like to know the answer to this. How is gseGO coded to deal with qvalues in the output?

IanCodes avatar Jan 05 '22 11:01 IanCodes