Related project based on TreeSummarizedExperiment

[antagomir]

There is also another project developing tools for microbiome data microbiome.github.io based on the TreeSummarizedExperiment data container that has been recently published in F1000.

[xiangpin]

TreeSummarizedExperiment looks nice. However, in order to make MicrobiotaProcess more interoperable with packages developed by us and others, it introduces MPSE contained SummarizedExperiment, taxatree and otutree, which inherit the treedata object, which was defined in tidytree. This meaning the taxatree and otutree can be processed and visualized via tidytree, treeio, ggtree and ggtreeExtra directly. Of cource, The TreeSummarizedExperiment also can be converted to MPSE via as.MPSE.

[antagomir]

Thanks, this is informative!