location of the deconvoluted spots

[chrkuo]

Hi,

I am wondering after deconvolution is it possible to see which specific "spot" has what proportions of cell types and in return look at that spots gene enrichment and do a correlation analysis.

[chrkuo]

@YingMa0107 wanted to see if you have any response to this?

[YMalab]

Hi @chrkuo,

Based on your question, you can select the spots based on your threshold on the estimated cell type proportions, and then perform downstream correlation analysis with the gene sets.

Best, Ying