SNP density legend problem
Thank you very much for the R package you developed. When I was drawing the SNP density map, I found some problems with the legend. I don't know if it was caused by the CMplot version update.
As shown below, I am using sample code for testing, which does not appear in the legend at the end > `
packageVersion("CMplot") [1] ‘4.5.1’
data("pig60K") CMplot(pig60K,plot.type="d", bin.size=1e6,chr.den.col=c("darkgreen", "yellow", "red"),file="jpg",file.name="",dpi=300, main="illumilla_60K",file.output=F,verbose=TRUE,width=9,height=6) `
The legend in the example result in your specification ends up having >
Suddenly, I found that the density distribution of the whole graph was very different, and there were a lot of blank areas in the results I ran. I don't know whether the sample data set pig60K was modified
Thank you for the feedback. And sorry for the confusing results generated from CMplot. The difference between the two plots is caused by the different data attached in CMplot. The earliest version used full markers while the data in the latest is quality controlled by MAF. I will replace the corresponding plot in the tutorial to address the potential confusing issue.
Best, LL
Thank you for the feedback. And sorry for the confusing results generated from CMplot. The difference between the two plots is caused by the different data attached in CMplot. The earliest version used full markers while the data in the latest is quality controlled by MAF. I will replace the corresponding plot in the tutorial to address the potential confusing issue.感谢您的反馈。很抱歉 CMplot 生成的令人困惑的结果。两个图之间的差异是由 CMplot 中附加的不同数据引起的。最早的版本使用完整的标记,而最新的数据由 MAF 进行质量控制。我将替换教程中的相应情节,以解决潜在的混淆问题。
Best, 最好 LL 将
Thank you very much for your answer. Is the last “>” in the legend controlled by parameters? I think adding“>” at the end is more rigorous
Sorry, there are no parameters to set the symbol '>' in the new version of CMplot.