Delaney Sullivan
Delaney Sullivan
@spirpinias I expect that it will happen sometime this month. Delaney
In the devel version (available on the "devel" branch on GitHub), you can now compile kallisto via: `cmake .. -ENABLE_AVX2=OFF -COMPILATION_ARCH=OFF` That has not been put onto the "master" branch...
I apologize for the delay on this — things are still on devel branch, because a project accompanying the next release of kallisto is taking longer than expected to be...
done :) You can set those cmake options I mentioned above to disable those features, fixing build issues.
Ok, I think this is a gcc issue and you may need to upgrade your c++ compiler.
I'm sorry, but I'm not going to look through many lines of unformatted code to identify why you're observing a discrepancy. A few things to keep in mind: 1) Line...
Yes, I've been able to recapitulate my desired counts between TCCs and genes on my end. If you want, you can run the bustools commands on your BUS file, and...
I'll be honest: I've never actually analyzed MARS-seq data. From what I can find online, it seems like R2 contains a 7-bp barcode + 8-bp UMI, while R1 has a...
There should never be a space in the -x string. For split barcodes (or split UMI or split biological reads), see the instructions on page 7 of https://www.biorxiv.org/content/10.1101/2023.11.21.568164v2.full.pdf
It should go barcode file, then R1, then R2 (supplied in that order).