Cannot find CCFv3 dataset

Open lightoorange opened this issue 1 year ago • 1 comments

Dear Professor, I want to know where I can find this file when I try this great STitch3D. #3D coordinates and model are based on CCFv3. load("spotstable.RData") load("VOLUMESMALL.RData") load("VOLUME.RData") in this part, "Run STitch3D on the adult mouse brain dataset" I know this issue has been discussed in #14, but I am experiencing the same problem and am unsure how to modify the paths path.bin and path.matrices to the corresponding folders to obtain the data I need.

Thank you so much!

Jul 22 '24 14:07 lightoorange

Hi there,

path.bin refers to the path to the folder on your computer containing scripts in https://github.com/cantin-ortiz/molecular-atlas/tree/a409706716520a29471882c535b618a28d6a2b0c/bin. 'path.matrices' refers to the folder containing atlasspots.RData and vivid-colors.RData, which can be found in https://github.com/cantin-ortiz/molecular-atlas.

Aug 06 '24 15:08 gefeiwang