Convert paired-end RNA-seq to single-read RNA-seq?

[junjunlab]

Hi, Thanks for this great tool. The CIRCexplorer2 align only supports single-end read data. The documentation mentioned It is recommended to convert paired-end RNA-seq to single-read RNA-seq before alignment. Can I zcat test1.fq.gz test2.fq.gz > test.fq.gz as input? Thanks!

best wished, JunZhang