Mitochondrial circRNAs with CIRCexploere2

[BirongZhang]

Hey,

Thanks for sharing this amazing tool!

I found that chrMT appears in the .bed and .junction files, but not in the final counts table. I was wondering if there is any way to help me generate a circRNA counts table with mitochondrial circRNAs.

Any advice would be highly appreciated. Thanks.

Kind regards, Birong

[kepbod]

We did not set filters on the name of chromosomes. Theoretically, if your gene annotations contain mitochondrial genes, it can report mitochondrial circRNAs.