VVP-pub
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WARNING: chromosome not in offsets
Hi Steven, I tried running vvp on a test sample data and but it gives 'WARNING: chromosome chrY not in offsets' error all chr, also I have not been able to figure what the CSQ parameter is about. If you clarify these, it would be helpful for my analysis.
command : ./VVP -i /test_sample.vcf -d /VVP-pub-master/gnomad.062717.build -v CSQ,4,6,1,15 1>test_sample.out error : WARNING: chromosome chrY not in offsets