Yanay1

You could use the ESM2 embedding files directly. You can also load the model in python and then apply the `gene_embedding_layer` to those protein embeddings to get the modified smaller...

Sorry for the confusion-- by that we meant the docstrings in the code / scripts themselves, such as https://github.com/snap-stanford/UCE/blob/7b31528b84e4c8e7a9717c61e3d03ff7559c61af/eval_single_anndata.py#L1

I made the change to retro lab at the beginning of summer (before reverting back) so I have the paths which I guess I forgot to commit: ``` demos_base =...

I think students still occasionally see issues with long wait times for their notebooks to save, which affects otter grader as well. (I’ve also graduated).

When this issue happened for Okpy I increased the time out to around 10 minutes and it still ran into the issue for some students (a datahub issue), but it...

You can actually probably copy a lot of the same code I used for Okpy solution that Sam posted above (the wait for save function)!

Hi, are you launching the command with hugging face accelerator?