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compatibility with hiChIP data

Open SplitInf opened this issue 3 years ago • 2 comments

Hi this is more of a question than an issue. I was wondering if NeoLoopFinder can be applied to H3K27ac HiChIP, given the enhancer hijack use case as illustrated in the nature paper? Thanks!

SplitInf avatar Nov 28 '21 20:11 SplitInf

Hi, current NeoLoopFinder version cannot be directly applied to pulldown-based experiments. However, this extension is exactly what I want to add in next version :)

XiaoTaoWang avatar Dec 05 '21 15:12 XiaoTaoWang

Fantastic, that will be very useful for the community! Looking forward to use it.

SplitInf avatar Dec 05 '21 15:12 SplitInf