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File inter.hic cannot be opened

Open Luzmist opened this issue 1 year ago • 0 comments

Hello! I'm attempting to convert the format from Hi-C (Juicer output) to Cooler using HiCLift:
HiCLift --input inter_30.hic --input-format juicer --out-pre CN-10 --output-format cooler --out-chromsizes sizes.genome --in-assembly hg38 --out-assembly hg38 --memory 40G . However, I encountered the following error: File doesn't have the given chr_chr map 137_270 File inter_30.hic cannot be opened for reading

This are the chromosome names in my inter.hic file: NC_000001.11 NT_187361.1 , NT_187362.1 NT_187363.1

How can I solve this ?

Luzmist avatar Jan 30 '24 21:01 Luzmist