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The input pairs have at least two images. Source image and Target image, so you should make your input.txt like source target1image source target2image ... and so on But it's...

@ahoopes Thanks for your answer sincerely. And I have a question about the input.txt. According your paper, you let one image as fixed image and let the others as moving...

Sorry, I still don't know how to run the evaluate_segmenters.py. If I want use the mri-100unlabeled-test, how could I edit the code? Here is the errors 

@xamyzhao Sorry to trouble you. I waste much time on the script but still dont know how to run it. Can you tell me more details about it?

@xamyzhao I use the dataset you provided to train and test. I know I have to find new data to run the test script, but I want to run the...

@xamyzhao Thank you very much. I modify the code you mentioned, and then I met this question.