The last blank line is not ignored
WinMerge 2.16.4.0 x64
Program is configured to ignore whitespace, but:
- Last blank line is not ignored.
Text3lines are highlighted as different.

This is almost a year old, has there been any movement on this?
Is there any known workaround for this?
It flags just about every file for some of our projects due to a code cleaner adding a carriage return at the end of the file.
Still an issue - makes comparing much more complicated on huge amount of files.
I agree this should be fixed. most modern systems are able to handle texts without a blank last line. There is no need to highlight it specifically. If the concern is to maintain backward compatibility, maybe it can be added as an additional option. e.g.: [X] Ignore blank lines [_] including last line.
It's a critical bug in my eyes.. as the ignore whitespace option basically doesn't work. I switched to a BC for this reason as its marked as Not a bug.. indicating its intentional.