WilliamFCB

questions about QSIprep 12.1 flow description

7

Hi Matt, For an EU project, we used QSIprep 12 with a FSL 6.0.4 patch to allow running movement by susceptibility correction with eddy_cuda9.1 I am trying to reconstruct all...

Error loading yml plugin using 0.16.ORc3

2

Hi Matt, I started trying out 0.16.ORC3 The script apparently halted already when it tried to load a ..qsiprep_plugin.yml file Traceback (most recent call last): File "/usr/local/miniconda/lib/python3.8/multiprocessing/process.py", line 315, in...

Bad slices in qsiprep processed data

10

Hi I successfully ran qsiprep. However, in one particular data set, in contrast with other data sets, I found in many cases bad slices after correction (t1_num_bad_slices) For example, one...

Tractometry results: suboptimal alignment of tracts across subjects?

3

Hi All, We have data run with tractseg 2.2 DWI data was processed with qsiprep including ( intensity normalization, gibs ringing correction, TopUp, eddy (including movement by susceptibility interaction etc)...

Some thoughts on QC evaluation of qsiprep processed DWI data

2

Hi Matt, Some thoughts on and questions regarding the QC evaluation of qsiprep processed data. I was wondering if the carpetplot provided by qsiprep could be updated to the color...