Error in rowSums(Ma) : 'x' must be an array of at least two dimensions

[nfancy]

Hi,

Thank you for this package. I have been looking for something like this. I tried to use this with my data but I got the following error.

Error in rowSums(Ma) : 'x' must be an array of at least two dimensions

My codes are:

egm = create_ENIGMA(bulk = as.matrix(countdata_all), 
                    ref = sce,
                    ref_type = "single_cell", 
                    meta_ref = colData(sce))

egm = batch_correct(egm, 
                    varname_cell_type = "celltype_global",
                    n_pseudo_bulk=100)

Here, I am using a SingleCellExperiment object. Can you please help with the error?

Nurun