Lineage information input in the command line usage of CEFCON

[LiuCanidk]

Hi, @WPZgithub I have a question on lineage information input in the command line usage of CEFCON. As I'm not familiar with the python, I prefer to use the command line tools for CEFCON. But if I input an expression matrix as a csv file, I realize I did not input the lineage information and found no other arguments if I specify the input_expData as the csv file purely.

I guess the information was included in the single cell object like the python package SCANPY AnnData object. But since the CEFCON offered the option to input the csv file, how can I input the lineage information with the csv file to construct the lineage specific GRN?

Many thanks if early reply can be received!