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Are there any plan to add support for repeat unit with IUPAC nucleotides?

Open ymcki opened this issue 2 years ago • 3 comments

Thanks for developing NanoRepeat. From my own testing, it seems to be doing much better than straglr.

However, I find that NanoRepeat doesn't support IUPAC nucleotides in repeat unit but straglr does. It would be great if IUPAC support is added.

If that's too much to ask, is it possible to support poly-alanine repeat which has a repeat unit of GCN?

It occurs in PHOX2B gene and is a well documented trinucleotide repeat disorder. https://academic.oup.com/hmg/article/13/suppl_2/R235/619705

Thanks a lot in advance.

ymcki avatar Jul 24 '23 09:07 ymcki

Sure. I'm happy to add support for GCN.

Thanks for requesting this. Li

fangli80 avatar Jul 24 '23 09:07 fangli80

Great! Looking forward to that in the next release.

ymcki avatar Jul 25 '23 01:07 ymcki

Any updates on this feature?

eostrow avatar Aug 26 '24 02:08 eostrow