Vitaly Korchagin

Using GreenGenes2 as Kraken2 custom DB

2

Until the major update of GreenGenes DB to GreenGenes2, it can be easily used as a custom 16S database for Kraken 2. This will be implemented as a simple bash...

No results from get_sequence_type

5

I download MLST database by `download_mlst_databases` and make `export MLST_DATABASES=/export/data/user/MLSTdb` ``` (base) [user@bigmem01 STRP-2020]$ get_sequence_type -a Achromobacter spp Acinetobacter baumannii 1 Acinetobacter baumannii 2 Aeromonas spp Aggregatibacter actinomycetemcomitans Anaplasma phagocytophilum...

By default, _ggbetweenstats_ and _ggwithinstats_ display points, boxplots, and violins. However, the output of outliers is disabled for boxplots (to exclude dubling points), since these points are visible on the...