AIMSim

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SimSIMD (https://github.com/ashvardanian/SimSIMD) implements a number of our similarity criteria, but like _way_ faster. We should change some of our similarity implementations to use those, rather than the numpy/scipy equivalents.

JacksonBurns

Fix TSNE perpelexity parameter for sklearn 1.2.1

2

himaghna

As shown in the [source code for `MoleculeSet`](https://github.com/VlachosGroup/AIMSim/blob/ec27073e25a1903d48b5d55cf873fea8637d71e3/aimsim/chemical_datastructures/molecule_set.py#L225), name and descriptor columns are expected to be prefixed in a very particular way, but this is not stated in the documentation....

JacksonBurns