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[Feature request] fastg to gfa converter

Open Vini2 opened this issue 2 years ago • 1 comments

Is your feature request related to a problem? Please describe. Currently, phables takes assembly graph files only in gfa format.

Describe the solution you'd like Add a converting step if fastg files are provided to convert to gfa format.

Vini2 avatar Feb 17 '23 01:02 Vini2

The fastg2gfa referred in the docs for converting MegaHIT's assembly graph is a bit confusing and points to a deprecated repo. I tried the gfatools and it seems to properly convert the .fastg into .gfa with gfatools view graph.fastg > graph.gfa

pdec avatar Mar 14 '24 14:03 pdec