Vasco Elbrecht

plot_alignments crashes when only plotting one fasta file

1

Temporary fix: load the same fasta file 2 times. Then it does get plotted.

currently mitogenome sequences are provided, to make an alignment, and use that degenerated consensus as a backbone for mapping all reads against. It would be better to cluster the mito...

this would allow the consensus writing to skip the toupper step

speed up writing OTU consensus sequences in the batch_download comand

1

implement the consensus generation scripts from plot_alignments -> will lead to significant speed up! (I didn't look at the code for ages, so it might take some time to get...

Should not be a problem in typical usage. Low priority bug. caused by duplicates in the "log.txt" file, for example if you cluster sequences a second time.