Ularcirc
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VCCRI
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
STEP2: Load annotation databases: Ularcirc comes with one existing data set that has been aligned to hg38. While annotation is not required to identify circRNAs we recomment to download the...
Hi, thanks for this interesting tool. I am current trying to get ularcirc to run with some of my data. Unfortunately, the reference genome for alignments don't match the UCSC...
Hi David, Thank you for the updated code for the BS junction sequence. I still have a minor pb when using Ciri output as it uses bwa and not STAR...
No matter which junction I click on in Gene_View, when I click on the Junction_View tab I get the pop-up error "Cannot retrieve genomic information for this gene". Below the...
The output table in Gene View tab has 22 columns. Could an explanation for each be in the vignette? For example, I see BSJ_vs_FSJ is always 0 and I wonder...
Could there be a better default name, perhaps containing the gene name and ending in PDF? The default file name causes the file to be by default opened with a...
Dear Sir or Madam, I am trying to use the Ularcirc to visualize the circRNAs I found. I just followed the installation pipeline but failed with the error info: package...
