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Can AlphaFold2 predict the structure of cyclic peptides?

Open JustinDoIt opened this issue 3 years ago • 0 comments

I have a cyclic peptide sequence. I put it into Alphafold2 Colab, but I didn't get a cyclic peptide structure. What should I do to connect the C-terminal and N-terminal for the next dynamic simulation (GROMACS)?

Should I do some processing on the structure obtained by Alphafold2 Colab for Gromacs dynamics? Or input sequence to Alphafold2 Colab need for some pre-processing? Or can Alphafold2 not predict the sequence of cyclic peptides?

It's really important for my research, thanks for any help.

JustinDoIt avatar Sep 08 '21 14:09 JustinDoIt