siphon MNT: (deps): Bump actions/setup-python from 4 to 5

Release notes

Sourced from actions/setup-python's releases.

v5.0.0

What's Changed

In scope of this release, we update node version runtime from node16 to node20 (actions/setup-python#772). Besides, we update dependencies to the latest versions.

Full Changelog: https://github.com/actions/setup-python/compare/v4.8.0...v5.0.0

v4.8.0

What's Changed

In scope of this release we added support for GraalPy (actions/setup-python#694). You can use this snippet to set up GraalPy:
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v4 
  with:
    python-version: 'graalpy-22.3' 
- run: python my_script.py
Besides, the release contains such changes as:

Trim python version when reading from file by @FerranPares in actions/setup-python#628

Use non-deprecated versions in examples by @jeffwidman in actions/setup-python#724

Change deprecation comment to past tense by @jeffwidman in actions/setup-python#723

Bump @babel/traverse from 7.9.0 to 7.23.2 by @dependabot in actions/setup-python#743

advanced-usage.md: Encourage the use actions/checkout@v4 by @cclauss in actions/setup-python#729

Examples now use checkout@v4 by @simonw in actions/setup-python#738

Update actions/checkout to v4 by @dmitry-shibanov in actions/setup-python#761

New Contributors

@FerranPares made their first contribution in actions/setup-python#628

@timfel made their first contribution in actions/setup-python#694

@jeffwidman made their first contribution in actions/setup-python#724

Full Changelog: https://github.com/actions/setup-python/compare/v4...v4.8.0

v4.7.1

What's Changed

Bump word-wrap from 1.2.3 to 1.2.4 by @dependabot in actions/setup-python#702

Add range validation for toml files by @dmitry-shibanov in actions/setup-python#726

Full Changelog: https://github.com/actions/setup-python/compare/v4...v4.7.1

v4.7.0

In scope of this release, the support for reading python version from pyproject.toml was added (actions/setup-python#669).
      - name: Setup Python
        uses: actions/setup-python@v4
</tr></table> 

... (truncated)

Commits

f677139 Bump pyinstaller from 3.6 to 5.13.1 in /tests/data (#923)
2bd53f9 Documentation update for caching poetry dependencies (#908)
80b49d3 fix: add arch to cache key (#896)
036a523 Fix: Add .zip extension to Windows package downloads for Expand-Archive C...
04c1311 Fix display of emojis in contributors doc (#899)
cb68456 Updated @iarna/toml version to 3.0.0 (#912)
39cd149 Documentation update for cache (#873)
a0d74c0 fix(ci): update all failing workflows (#863)
4eb7dbc Bump braces from 3.0.2 to 3.0.3 (#893)
82c7e63 Documentation changes for avoiding rate limit issues on GHES (#835)
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Sep 04 '24 08:09 dependabot[bot]

@edwardhartnett @jhendersonHDF if anything leaps out at you, feel free to chime in, it might save some time as I dig through this! And if not, no worries XD. Thanks!

Sep 06 '24 20:09 WardF

Additional notes:

On ubuntu 24.04, installing libhdf5-mpi-dev installs openmpi and related tools. This version of libhdf5 works just fine, although the nc_test4/run_par_test.sh script requires --oversubscribe be passed to mpiexec -n 16 ./tst_parallel3. Otherwise, there is a complaint if the machine has < 16 cores/processors/what-have-you.

Using mpich and a custom-built libhdf5, we cannot oversubscribe. However, this is not an issue, because invoking mpiexec -n 2 ./tst_parallel3 results in the same issue as if we passed 4, or 8, or 16. Running tst_parallel3 directly works, but of course it is bypassing MPI entirely.

Installing libhdf5-mpich-dev sees the same behavior as using the custom-built version of libhdf5. This suggests there is an issue when using mpich but not inherently MPI.

Sep 09 '24 22:09 WardF