netcdf4-python
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Unidata
Segmentation fault when reading slices of data
I have a problem since I switched from python-netcdf to netCDF4 with zlib compression enabled. I get segfaults when reading slices of a variable, but when I read the whole data using [:] everything seems to be alright. Also, when I open the data using ncview, everything is OK. I attached the .nc file and a simple script which produces the error.
Kind regards, Juergen
btw: tried netCDF4==1.3.1, numpy==1.14.0, also tried netCDF4 v1.2.4 + numpy 1.8.2
Sometimes python spits out a backtrace:
*** Error in `python': realloc(): invalid next size: 0x0000000003f25e90 *** ======= Backtrace: ========= /lib/x86_64-linux-gnu/libc.so.6(+0x70bcb)[0x7fc81b733bcb] /lib/x86_64-linux-gnu/libc.so.6(+0x76f96)[0x7fc81b739f96] /lib/x86_64-linux-gnu/libc.so.6(+0x7a10c)[0x7fc81b73d10c] /lib/x86_64-linux-gnu/libc.so.6(realloc+0x159)[0x7fc81b73e6e9] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/.libs/libnetcdf-5d2a43ad.so.11.0.4(utf8proc_map+0x109)[0x7fc7e37e6ba5] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/.libs/libnetcdf-5d2a43ad.so.11.0.4(utf8proc_NFC+0x26)[0x7fc7e37e6c1b] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/.libs/libnetcdf-5d2a43ad.so.11.0.4(nc4_normalize_name+0x1c)[0x7fc7e386c0f2] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/.libs/libnetcdf-5d2a43ad.so.11.0.4(nc4_get_att+0xca)[0x7fc7e3857b2e] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/.libs/libnetcdf-5d2a43ad.so.11.0.4(NC4_inq_att+0xae)[0x7fc7e3858efc] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/.libs/libnetcdf-5d2a43ad.so.11.0.4(nc_inq_att+0x5c)[0x7fc7e37dc4fc] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/_netCDF4.so(+0xc341a)[0x7fc7e6c2841a] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/_netCDF4.so(+0xc9980)[0x7fc7e6c2e980] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/_netCDF4.so(+0x19ae1)[0x7fc7e6b7eae1] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/_netCDF4.so(+0x14827)[0x7fc7e6b79827] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/_netCDF4.so(+0xc95c7)[0x7fc7e6c2e5c7] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/_netCDF4.so(+0x3bd5b)[0x7fc7e6ba0d5b] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/_netCDF4.so(+0x19ae1)[0x7fc7e6b7eae1] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/_netCDF4.so(+0xcc40a)[0x7fc7e6c3140a] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/_netCDF4.so(+0x24e6d)[0x7fc7e6b89e6d] /usr/local/env/local/lib/python2.7/site-packages/netCDF4/_netCDF4.so(+0xa47e4)[0x7fc7e6c097e4] python(PyEval_EvalFrameEx+0x7466)[0x4d02a6] python(PyEval_EvalCodeEx+0x3c9)[0x4c7a59] python[0x50160f] python(PyRun_FileExFlags+0x82)[0x4f6c32] python(PyRun_SimpleFileExFlags+0x197)[0x4f5d37] python(Py_Main+0x55d)[0x4981cd] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf1)[0x7fc81b6e32b1] python[0x497b8b] ======= Memory map: ======== 00400000-0071e000 r-xp 00000000 09:00 534301 /usr/local/env/bin/python2 0091d000-0091e000 r--p 0031d000 09:00 534301 /usr/local/env/bin/python2 0091e000-0099b000 rw-p 0031e000 09:00 534301 /usr/local/env/bin/python2 0099b000-009ad000 rw-p 00000000 00:00 0 024ef000-08b42000 rw-p 00000000 00:00 0 [heap] 7fc7c0000000-7fc7c0021000 rw-p 00000000 00:00 0 7fc7c0021000-7fc7c4000000 ---p 00000000 00:00 0 7fc7c74da000-7fc7d05e2000 rw-p 00000000 00:00 0 7fc7d05e2000-7fc7d05e7000 r-xp 00000000 09:00 541067 /usr/local/env/lib/python2.7/site-packages/faulthandler.so 7fc7d05e7000-7fc7d07e6000 ---p 00005000 09:00 541067 /usr/local/env/lib/python2.7/site-packages/faulthandler.so 7fc7d07e6000-7fc7d07e7000 r--p 00004000 09:00 541067 /usr/local/env/lib/python2.7/site-packages/faulthandler.so 7fc7d07e7000-7fc7d07e8000 rw-p 00005000 09:00 541067 /usr/local/env/lib/python2.7/site-packages/faulthandler.so 7fc7d07e8000-7fc7d07ea000 r-xp 00000000 09:00 422734 /usr/lib/python2.7/lib-dynload/resource.x86_64-linux-gnu.so 7fc7d07ea000-7fc7d09ea000 ---p 00002000 09:00 422734 /usr/lib/python2.7/lib-dynload/resource.x86_64-linux-gnu.so 7fc7d09ea000-7fc7d09eb000 r--p 00002000 09:00 422734 /usr/lib/python2.7/lib-dynload/resource.x86_64-linux-gnu.so 7fc7d09eb000-7fc7d09ec000 rw-p 00003000 09:00 422734 /usr/lib/python2.7/lib-dynload/resource.x86_64-linux-gnu.so 7fc7d09ec000-7fc7d09ee000 r-xp 00000000 09:00 671957 /usr/local/env/lib/python2.7/site-packages/markupsafe/_speedups.so 7fc7d09ee000-7fc7d0bed000 ---p 00002000 09:00 671957 /usr/local/env/lib/python2.7/site-packages/markupsafe/_speedups.so 7fc7d0bed000-7fc7d0bee000 r--p 00001000 09:00 671957 /usr/local/env/lib/python2.7/site-packages/markupsafe/_speedups.so 7fc7d0bee000-7fc7d0bef000 rw-p 00002000 09:00 671957 /usr/local/env/lib/python2.7/site-packages/markupsafe/_speedups.so 7fc7d0bef000-7fc7d0bff000 r-xp 00000000 09:00 422732 /usr/lib/python2.7/lib-dynload/pyexpat.x86_64-linux-gnu.so 7fc7d0bff000-7fc7d0dff000 ---p 00010000 09:00 422732 /usr/lib/python2.7/lib-dynload/pyexpat.x86_64-linux-gnu.so 7fc7d0dff000-7fc7d0e00000 r--p 00010000 09:00 422732 /usr/lib/python2.7/lib-dynload/pyexpat.x86_64-linux-gnu.so 7fc7d0e00000-7fc7d0e02000 rw-p 00011000 09:00 422732 /usr/lib/python2.7/lib-dynload/pyexpat.x86_64-linux-gnu.so 7fc7d0e02000-7fc7d0e12000 r-xp 00000000 09:00 422711 /usr/lib/python2.7/lib-dynload/_elementtree.x86_64-linux-gnu.so 7fc7d0e12000-7fc7d1011000 ---p 00010000 09:00 422711 /usr/lib/python2.7/lib-dynload/_elementtree.x86_64-linux-gnu.so 7fc7d1011000-7fc7d1012000 r--p 0000f000 09:00 422711 /usr/lib/python2.7/lib-dynload/_elementtree.x86_64-linux-gnu.so 7fc7d1012000-7fc7d1013000 rw-p 00010000 09:00 422711 /usr/lib/python2.7/lib-dynload/_elementtree.x86_64-linux-gnu.so 7fc7d1013000-7fc7d101a000 r-xp 00000000 09:00 422706 /usr/lib/python2.7/lib-dynload/_csv.x86_64-linux-gnu.so 7fc7d101a000-7fc7d1219000 ---p 00007000 09:00 422706 /usr/lib/python2.7/lib-dynload/_csv.x86_64-linux-gnu.so 7fc7d1219000-7fc7d121a000 r--p 00006000 09:00 422706 /usr/lib/python2.7/lib-dynload/_csv.x86_64-linux-gnu.so 7fc7d121a000-7fc7d121c000 rw-p 00007000 09:00 422706 /usr/lib/python2.7/lib-dynload/_csv.x86_64-linux-gnu.so 7fc7d121c000-7fc7d122f000 r-xp 00000000 09:00 526804 /lib/x86_64-linux-gnu/libgpg-error.so.0.21.0 7fc7d122f000-7fc7d142e000 ---p 00013000 09:00 526804 /lib/x86_64-linux-gnu/libgpg-error.so.0.21.0 7fc7d142e000-7fc7d142f000 r--p 00012000 09:00 526804 /lib/x86_64-linux-gnu/libgpg-error.so.0.21.0 7fc7d142f000-7fc7d1430000 rw-p 00013000 09:00 526804 /lib/x86_64-linux-gnu/libgpg-error.so.0.21.0 7fc7d1430000-7fc7d1537000 r-xp 00000000 09:00 523334 /lib/x86_64-linux-gnu/libgcrypt.so.20.1.6 7fc7d1537000-7fc7d1737000 ---p 00107000 09:00 523334 /lib/x86_64-linux-gnu/libgcrypt.so.20.1.6 7fc7d1737000-7fc7d1739000 r--p 00107000 09:00 523334 /lib/x86_64-linux-gnu/libgcrypt.so.20.1.6 7fc7d1739000-7fc7d1740000 rw-p 00109000 09:00 523334 /lib/x86_64-linux-gnu/libgcrypt.so.20.1.6 7fc7d1740000-7fc7d1853000 r-xp 00000000 09:00 397051 /usr/lib/x86_64-linux-gnu/libunistring.so.0.1.2 7fc7d1853000-7fc7d1a52000 ---p 00113000 09:00 397051 /usr/lib/x86_64-linux-gnu/libunistring.so.0.1.2 7fc7d1a52000-7fc7d1a55000 r--p 00112000 09:00 397051 /usr/lib/x86_64-linux-gnu/libunistring.so.0.1.2 7fc7d1a55000-7fc7d1a56000 rw-p 00115000 09:00 397051 /usr/lib/x86_64-linux-gnu/libunistring.so.0.1.2 7fc7d1a56000-7fc7d1a57000 rw-p 00000000 00:00 0 7fc7d1a57000-7fc7d1a95000 r-xp 00000000 09:00 415578 /usr/lib/x86_64-linux-gnu/libquadmath.so.0.0.0 7fc7d1a95000-7fc7d1c94000 ---p 0003e000 09:00 415578 /usr/lib/x86_64-linux-gnu/libquadmath.so.0.0.0 7fc7d1c94000-7fc7d1c95000 r--p 0003d000 09:00 415578 /usr/lib/x86_64-linux-gnu/libquadmath.so.0.0.0 7fc7d1c95000-7fc7d1c96000 rw-p 0003e000 09:00 415578 /usr/lib/x86_64-linux-gnu/libquadmath.so.0.0.0 7fc7d1c96000-7fc7d1dba000 r-xp 00000000 09:00 407452 /usr/lib/x86_64-linux-gnu/libgfortran.so.3.0.0 7fc7d1dba000-7fc7d1fb9000 ---p 00124000 09:00 407452 /usr/lib/x86_64-linux-gnu/libgfortran.so.3.0.0 7fc7d1fb9000-7fc7d1fba000 r--p 00123000 09:00 407452 /usr/lib/x86_64-linux-gnu/libgfortran.so.3.0.0 7fc7d1fba000-7fc7d1fbc000 rw-p 00124000 09:00 407452 /usr/lib/x86_64-linux-gnu/libgfortran.so.3.0.0 7fc7d1fbc000-7fc7d2348000 r-xp 00000000 09:00 1049465 /usr/lib/atlas-base/libatlas.so.3.0 7fc7d2348000-7fc7d2547000 ---p 0038c000 09:00 1049465 /usr/lib/atlas-base/libatlas.so.3.0 7fc7d2547000-7fc7d254b000 r--p 0038b000 09:00 1049465 /usr/lib/atlas-base/libatlas.so.3.0 7fc7d254b000-7fc7d254f000 rw-p 0038f000 09:00 1049465 /usr/lib/atlas-base/libatlas.so.3.0 7fc7d254f000-7fc7d255b000 r-xp 00000000 09:00 397055 /usr/lib/x86_64-linux-gnu/libpsl.so.5.1.1 7fc7d255b000-7fc7d275b000 ---p 0000c000 09:00 397055 /usr/lib/x86_64-linux-gnu/libpsl.so.5.1.1 7fc7d275b000-7fc7d275c000 r--p 0000c000 09:00 397055 /usr/lib/x86_64-linux-gnu/libpsl.so.5.1.1 7fc7d275c000-7fc7d275d000 rw-p 0000d000 09:00 397055 /usr/lib/x86_64-linux-gnu/libpsl.so.5.1.1 7fc7d275d000-7fc7d2788000 r-xp 00000000 09:00 404942 /usr/lib/x86_64-linux-gnu/libssh2.so.1.0.1 7fc7d2788000-7fc7d2987000 ---p 0002b000 09:00 404942 /usr/lib/x86_64-linux-gnu/libssh2.so.1.0.1 7fc7d2987000-7fc7d2988000 r--p 0002a000 09:00 404942 /usr/lib/x86_64-linux-gnu/libssh2.so.1.0.1 7fc7d2988000-7fc7d2989000 rw-p 0002b000 09:00 404942 /usr/lib/x86_64-linux-gnu/libssh2.so.1.0.1 7fc7d2989000-7fc7d29a4000 r-xp 00000000 09:00 396050 /usr/lib/x86_64-linux-gnu/librtmp.so.1 7fc7d29a4000-7fc7d2ba4000 ---p 0001b000 09:00 396050 /usr/lib/x86_64-linux-gnu/librtmp.so.1 7fc7d2ba4000-7fc7d2ba5000 r--p 0001b000 09:00 396050 /usr/lib/x86_64-linux-gnu/librtmp.so.1 7fc7d2ba5000-7fc7d2ba6000 rw-p 0001c000 09:00 396050 /usr/lib/x86_64-linux-gnu/librtmp.so.1 7fc7d2ba6000-7fc7d2bc7000 r-xp 00000000 09:00 397053 /usr/lib/x86_64-linux-gnu/libidn2.so.0.1.4 7fc7d2bc7000-7fc7d2dc6000 ---p 00021000 09:00 397053 /usr/lib/x86_64-linux-gnu/libidn2.so.0.1.4 7fc7d2dc6000-7fc7d2dc7000 r--p 00020000 09:00 397053 /usr/lib/x86_64-linux-gnu/libidn2.so.0.1.4 7fc7d2dc7000-7fc7d2dc8000 rw-p 00021000 09:00 397053 /usr/lib/x86_64-linux-gnu/libidn2.so.0.1.4 7fc7d2dc8000-7fc7d2deb000 r-xp 00000000 09:00 395885 /usr/lib/x86_64-linux-gnu/libnghttp2.so.14.12.3 7fc7d2deb000-7fc7d2fea000 ---p 00023000 09:00 395885 /usr/lib/x86_64-linux-gnu/libnghttp2.so.14.12.3 7fc7d2fea000-7fc7d2feb000 r--p 00022000 09:00 395885 /usr/lib/x86_64-linux-gnu/libnghttp2.so.14.12.3 7fc7d2feb000-7fc7d2fee000 rw-p 00023000 09:00 395885 /usr/lib/x86_64-linux-gnu/libnghttp2.so.14.12.3 7fc7d2fee000-7fc7d30f1000 r-xp 00000000 09:00 400598 /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6 7fc7d30f1000-7fc7d32f0000 ---p 00103000 09:00 400598 /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6 7fc7d32f0000-7fc7d32f3000 r--p 00102000 09:00 400598 /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6 7fc7d32f3000-7fc7d32f5000 rw-p 00105000 09:00 400598 /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6 7fc7d32f5000-7fc7d32f6000 rw-p 00000000 00:00 0 7fc7d32f6000-7fc7d3301000 r-xp 00000000 09:00 401119 /usr/lib/x86_64-linux-gnu/libjbig.so.0 7fc7d3301000-7fc7d3500000 ---p 0000b000 09:00 401119 /usr/lib/x86_64-linux-gnu/libjbig.so.0 7fc7d3500000-7fc7d3501000 r--p 0000a000 09:00 401119 /usr/lib/x86_64-linux-gnu/libjbig.so.0 7fc7d3501000-7fc7d3504000 rw-p 0000b000 09:00 401119 /usr/lib/x86_64-linux-gnu/libjbig.so.0 7fc7d3504000-7fc7d350b000 r-xp 00000000 09:00 398536 /usr/lib/x86_64-linux-gnu/libaec.so.0.0.3 7fc7d350b000-7fc7d370a000 ---p 00007000 09:00 398536 /usr/lib/x86_64-linux-gnu/libaec.so.0.0.3 7fc7d370a000-7fc7d370b000 r--p 00006000 09:00 398536 /usr/lib/x86_64-linux-gnu/libaec.so.0.0.3 7fc7d370b000-7fc7d370c000 rw-p 00007000 09:00 398536 /usr/lib/x86_64-linux-gnu/libaec.so.0.0.3 7fc7d370c000-7fc7d4f88000 r-xp 00000000 09:00 396299 /usr/lib/x86_64-linux-gnu/libicudata.so.57.1 7fc7d4f88000-7fc7d5187000 ---p 0187c000 09:00 396299 /usr/lib/x86_64-linux-gnu/libicudata.so.57.1 7fc7d5187000-7fc7d5188000 r--p 0187b000 09:00 396299 /usr/lib/x86_64-linux-gnu/libicudata.so.57.1 7fc7d5188000-7fc7d5189000 rw-p 0187c000 09:00 396299 /usr/lib/x86_64-linux-gnu/libicudata.so.57.1 7fc7d5189000-7fc7d531d000 r-xp 00000000 09:00 409685 /usr/lib/x86_64-linux-gnu/libicuuc.so.57.1 7fc7d531d000-7fc7d551c000 ---p 00194000 09:00 409685 /usr/lib/x86_64-linux-gnu/libicuuc.so.57.1 7fc7d551c000-7fc7d552e000 r--p 00193000 09:00 409685 /usr/lib/x86_64-linux-gnu/libicuuc.so.57.1 7fc7d552e000-7fc7d552f000 rw-p 001a5000 09:00 409685 /usr/lib/x86_64-linux-gnu/libicuuc.so.57.1 7fc7d552f000-7fc7d5531000 rw-p 00000000 00:00 0 7fc7d5531000-7fc7d579c000 r-xp 00000000 09:00 396301 /usr/lib/x86_64-linux-gnu/libicui18n.so.57.1 7fc7d579c000-7fc7d599b000 ---p 0026b000 09:00 396301 /usr/lib/x86_64-linux-gnu/libicui18n.so.57.1 7fc7d599b000-7fc7d59a8000 r--p 0026a000 09:00 396301 /usr/lib/x86_64-linux-gnu/libicui18n.so.57.1 7fc7d59a8000-7fc7d59aa000 rw-p 00277000 09:00 396301 /usr/lib/x86_64-linux-gnu/libicui18n.so.57.1 7fc7d59aa000-7fc7d59ab000 rw-p 00000000 00:00 0 7fc7d59ab000-7fc7d59bf000 r-xp 00000000 09:00 523985 /lib/x86_64-linux-gnu/libnsl-2.24.so 7fc7d59bf000-7fc7d5bbf000 ---p 00014000 09:00 523985 /lib/x86_64-linux-gnu/libnsl-2.24.so 7fc7d5bbf000-7fc7d5bc0000 r--p 00014000 09:00 523985 /lib/x86_64-linux-gnu/libnsl-2.24.so 7fc7d5bc0000-7fc7d5bc1000 rw-p 00015000 09:00 523985 /lib/x86_64-linux-gnu/libnsl-2.24.so 7fc7d5bc1000-7fc7d5bc3000 rw-p 00000000 00:00 0 7fc7d5bc3000-7fc7d5be0000 r-xp 00000000 09:00 404786 /usr/lib/x86_64-linux-gnu/libkmlconvenience.so.1.3.0 7fc7d5be0000-7fc7d5de0000 ---p 0001d000 09:00 404786 /usr/lib/x86_64-linux-gnu/libkmlconvenience.so.1.3.0 7fc7d5de0000-7fc7d5de1000 r--p 0001d000 09:00 404786 /usr/lib/x86_64-linux-gnu/libkmlconvenience.so.1.3.0 7fc7d5de1000-7fc7d5de2000 rw-p 0001e000 09:00 404786 /usr/lib/x86_64-linux-gnu/libkmlconvenience.so.1.3.0 7fc7d5de2000-7fc7d5dfd000 r-xp 00000000 09:00 408483 /usr/lib/x86_64-linux-gnu/liburiparser.so.1.0.20 7fc7d5dfd000-7fc7d5ffc000 ---p 0001b000 09:00 408483 /usr/lib/x86_64-linux-gnu/liburiparser.so.1.0.20 7fc7d5ffc000-7fc7d5ffd000 r--p 0001a000 09:00 408483 /usr/lib/x86_64-linux-gnu/liburiparser.so.1.0.20 7fc7d5ffd000-7fc7d5ffe000 rw-p 0001b000 09:00 408483 /usr/lib/x86_64-linux-gnu/liburiparser.so.1.0.20 7fc7d5ffe000-7fc7d6009000 r-xp 00000000 09:00 404641 /usr/lib/x86_64-linux-gnu/libminizip.so.1.0.0 7fc7d6009000-7fc7d6208000 ---p 0000b000 09:00 404641 /usr/lib/x86_64-linux-gnu/libminizip.so.1.0.0 7fc7d6208000-7fc7d6209000 r--p 0000a000 09:00 404641 /usr/lib/x86_64-linux-gnu/libminizip.so.1.0.0 7fc7d6209000-7fc7d620a000 rw-p 0000b000 09:00 404641 /usr/lib/x86_64-linux-gnu/libminizip.so.1.0.0 7fc7d620a000-7fc7d6213000 r-xp 00000000 09:00 403128 /usr/lib/x86_64-linux-gnu/libltdl.so.7.3.1 7fc7d6213000-7fc7d6412000 ---p 00009000 09:00 403128 /usr/lib/x86_64-linux-gnu/libltdl.so.7.3.1 7fc7d6412000-7fc7d6413000 r--p 00008000 09:00 403128 /usr/lib/x86_64-linux-gnu/libltdl.so.7.3.1 7fc7d6413000-7fc7d6414000 rw-p 00009000 09:00 403128 /usr/lib/x86_64-linux-gnu/libltdl.so.7.3.1 7fc7d6414000-7fc7d641f000 r-xp 00000000 09:00 527290 /lib/x86_64-linux-gnu/libpopt.so.0.0.0 7fc7d641f000-7fc7d661f000 ---p 0000b000 09:00 527290 /lib/x86_64-linux-gnu/libpopt.so.0.0.0 7fc7d661f000-7fc7d6620000 r--p 0000b000 09:00 527290 /lib/x86_64-linux-gnu/libpopt.so.0.0.0 7fc7d6620000-7fc7d6621000 rw-p 0000c000 09:00 527290 /lib/x86_64-linux-gnu/libpopt.so.0.0.0 7fc7d6621000-7fc7d66c9000 r-xp 00000000 09:00 393793 /usr/lib/x86_64-linux-gnu/libfreetype.so.6.12.3 7fc7d66c9000-7fc7d68c9000 ---p 000a8000 09:00 393793 /usr/lib/x86_64-linux-gnu/libfreetype.so.6.12.3 7fc7d68c9000-7fc7d68cf000 r--p 000a8000 09:00 393793 /usr/lib/x86_64-linux-gnu/libfreetype.so.6.12.3 7fc7d68cf000-7fc7d68d0000 rw-p 000ae000 09:00 393793 /usr/lib/x86_64-linux-gnu/libfreetype.so.6.12.3 7fc7d68d0000-7fc7d690c000 r-xp 00000000 09:00 427316 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.8.0 7fc7d690c000-7fc7d6b0b000 ---p 0003c000 09:00 427316 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.8.0 7fc7d6b0b000-7fc7d6b0d000 r--p 0003b000 09:00 427316 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.8.0 7fc7d6b0d000-7fc7d6b0e000 rw-p 0003d000 09:00 427316 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.8.0 7fc7d6b0e000-7fc7d6b49000 r-xp 00000000 09:00 402687 /usr/lib/x86_64-linux-gnu/libnspr4.so 7fc7d6b49000-7fc7d6d49000 ---p 0003b000 09:00 402687 /usr/lib/x86_64-linux-gnu/libnspr4.so 7fc7d6d49000-7fc7d6d4a000 r--p 0003b000 09:00 402687 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0002d000 09:00 401726 /usr/lib/x86_64-linux-gnu/libnssutil3.so 7fc7d780a000-7fc7d794b000 r-xp 00000000 09:00 401725 /usr/lib/x86_64-linux-gnu/libnss3.so 7fc7d794b000-7fc7d7b4b000 ---p 00141000 09:00 401725 /usr/lib/x86_64-linux-gnu/libnss3.so 7fc7d7b4b000-7fc7d7b50000 r--p 00141000 09:00 401725 /usr/lib/x86_64-linux-gnu/libnss3.so 7fc7d7b50000-7fc7d7b52000 rw-p 00146000 09:00 401725 /usr/lib/x86_64-linux-gnu/libnss3.so 7fc7d7b52000-7fc7d7b54000 rw-p 00000000 00:00 0 7fc7d7b54000-7fc7d7baa000 r-xp 00000000 09:00 412823 /usr/lib/x86_64-linux-gnu/liblcms2.so.2.0.8 7fc7d7baa000-7fc7d7da9000 ---p 00056000 09:00 412823 /usr/lib/x86_64-linux-gnu/liblcms2.so.2.0.8 7fc7d7da9000-7fc7d7dab000 r--p 00055000 09:00 412823 /usr/lib/x86_64-linux-gnu/liblcms2.so.2.0.8 7fc7d7dab000-7fc7d7daf000 rw-p 00057000 09:00 412823 /usr/lib/x86_64-linux-gnu/liblcms2.so.2.0.8 7fc7d7daf000-7fc7d7db0000 rw-p 00000000 00:00 0 7fc7d7db0000-7fc7d7e20000 r-xp 00000000 09:00 411316 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09:00 1049464 /usr/lib/atlas-base/atlas/liblapack.so.3.0 7fc7d8b5e000-7fc7d8b9b000 r-xp 00000000 09:00 1049463 /usr/lib/atlas-base/atlas/libblas.so.3.0 7fc7d8b9b000-7fc7d8d9a000 ---p 0003d000 09:00 1049463 /usr/lib/atlas-base/atlas/libblas.so.3.0 7fc7d8d9a000-7fc7d8d9b000 r--p 0003c000 09:00 1049463 /usr/lib/atlas-base/atlas/libblas.so.3.0 7fc7d8d9b000-7fc7d8d9c000 rw-p 0003d000 09:00 1049463 /usr/lib/atlas-base/atlas/libblas.so.3.0 7fc7d8d9c000-7fc7d9118000 r-xp 00000000 09:00 404792 /usr/lib/x86_64-linux-gnu/libmariadbclient.so.18.0.0 7fc7d9118000-7fc7d9317000 ---p 0037c000 09:00 404792 /usr/lib/x86_64-linux-gnu/libmariadbclient.so.18.0.0 7fc7d9317000-7fc7d9321000 r--p 0037b000 09:00 404792 /usr/lib/x86_64-linux-gnu/libmariadbclient.so.18.0.0 7fc7d9321000-7fc7d9394000 rw-p 00385000 09:00 404792 /usr/lib/x86_64-linux-gnu/libmariadbclient.so.18.0.0 7fc7d9394000-7fc7d939e000 rw-p 00000000 00:00 0 7fc7d939e000-7fc7d954e000 r-xp 00000000 09:00 425019 /usr/lib/x86_64-linux-gnu/libxml2.so.2.9.4 7fc7d954e000-7fc7d974e000 ---p 001b0000 09:00 425019 /usr/lib/x86_64-linux-gnu/libxml2.so.2.9.4 7fc7d974e000-7fc7d9756000 r--p 001b0000 09:00 425019 /usr/lib/x86_64-linux-gnu/libxml2.so.2.9.4 7fc7d9756000-7fc7d9758000 rw-p 001b8000 09:00 425019 /usr/lib/x86_64-linux-gnu/libxml2.so.2.9.4 7fc7d9758000-7fc7d9759000 rw-p 00000000 00:00 0 7fc7d9759000-7fc7d97d4000 r-xp 00000000 09:00 413913 /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so.4.4.0 7fc7d97d4000-7fc7d99d4000 ---p 0007b000 09:00 413913 /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so.4.4.0 7fc7d99d4000-7fc7d99d7000 r--p 0007b000 09:00 413913 /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so.4.4.0 7fc7d99d7000-7fc7d99d8000 rw-p 0007e000 09:00 413913 /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so.4.4.0 7fc7d99d8000-7fc7d9a4a000 r-xp 00000000 09:00 528628 /lib/x86_64-linux-gnu/libpcre.so.3.13.3 7fc7d9a4a000-7fc7d9c49000 ---p 00072000 09:00 528628 /lib/x86_64-linux-gnu/libpcre.so.3.13.3 7fc7d9c49000-7fc7d9c4a000 r--p 00071000 09:00 528628 /lib/x86_64-linux-gnu/libpcre.so.3.13.3 7fc7d9c4a000-7fc7d9c4b000 rw-p 00072000 09:00 528628 /lib/x86_64-linux-gnu/libpcre.so.3.13.3 7fc7d9c4b000-7fc7da1cf000 r-xp 00000000 09:00 404794 /usr/lib/x86_64-linux-gnu/libspatialite.so.7.1.0 7fc7da1cf000-7fc7da3ce000 ---p 00584000 09:00 404794 /usr/lib/x86_64-linux-gnu/libspatialite.so.7.1.0 7fc7da3ce000-7fc7da3cf000 r--p 00583000 09:00 404794 /usr/lib/x86_64-linux-gnu/libspatialite.so.7.1.0 7fc7da3cf000-7fc7da3d3000 rw-p 00584000 09:00 404794 /usr/lib/x86_64-linux-gnu/libspatialite.so.7.1.0 7fc7da3d3000-7fc7da3d4000 rw-p 00000000 00:00 0 7fc7da3d4000-7fc7da566000 r-xp 00000000 09:00 393208 /usr/lib/x86_64-linux-gnu/libdap.so.23.1.0 7fc7da566000-7fc7da766000 ---p 00192000 09:00 393208 /usr/lib/x86_64-linux-gnu/libdap.so.23.1.0 7fc7da766000-7fc7da76f000 r--p 00192000 09:00 393208 /usr/lib/x86_64-linux-gnu/libdap.so.23.1.0 7fc7da76f000-7fc7da770000 rw-p 0019b000 09:00 393208 /usr/lib/x86_64-linux-gnu/libdap.so.23.1.0 7fc7da770000-7fc7da771000 rw-p 00000000 00:00 0 7fc7da771000-7fc7da77f000 r-xp 00000000 09:00 398668 /usr/lib/x86_64-linux-gnu/libdapserver.so.7.6.5 7fc7da77f000-7fc7da97f000 ---p 0000e000 09:00 398668 /usr/lib/x86_64-linux-gnu/libdapserver.so.7.6.5 7fc7da97f000-7fc7da980000 r--p 0000e000 09:00 398668 /usr/lib/x86_64-linux-gnu/libdapserver.so.7.6.5 7fc7da980000-7fc7da981000 rw-p 0000f000 09:00 398668 /usr/lib/x86_64-linux-gnu/libdapserver.so.7.6.5 7fc7da981000-7fc7da9c7000 r-xp 00000000 09:00 396606 /usr/lib/x86_64-linux-gnu/libdapclient.so.6.1.5 7fc7da9c7000-7fc7dabc6000 ---p 00046000 09:00 396606 /usr/lib/x86_64-linux-gnu/libdapclient.so.6.1.5 7fc7dabc6000-7fc7dabc8000 r--p 00045000 09:00 396606 /usr/lib/x86_64-linux-gnu/libdapclient.so.6.1.5 7fc7dabc8000-7fc7dabc9000 rw-p 00047000 09:00 396606 /usr/lib/x86_64-linux-gnu/libdapclient.so.6.1.5 7fc7dabc9000-7fc7dabee000 r-xp 00000000 09:00 523722 /lib/x86_64-linux-gnu/liblzma.so.5.2.2 7fc7dabee000-7fc7daded000 ---p 00025000 09:00 523722 /lib/x86_64-linux-gnu/liblzma.so.5.2.2 7fc7daded000-7fc7dadee000 r--p 00024000 09:00 523722 /lib/x86_64-linux-gnu/liblzma.so.5.2.2 7fc7dadee000-7fc7dadef000 rw-p 00025000 09:00 523722 /lib/x86_64-linux-gnu/liblzma.so.5.2.2 7fc7dadef000-7fc7dae20000 r-xp 00000000 09:00 393784 /usr/lib/x86_64-linux-gnu/libpng16.so.16.28.0 7fc7dae20000-7fc7db020000 ---p 00031000 09:00 393784 /usr/lib/x86_64-linux-gnu/libpng16.so.16.28.0 7fc7db020000-7fc7db021000 r--p 00031000 09:00 393784 /usr/lib/x86_64-linux-gnu/libpng16.so.16.28.0 7fc7db021000-7fc7db022000 rw-p 00032000 09:00 393784 /usr/lib/x86_64-linux-gnu/libpng16.so.16.28.0 7fc7db022000-7fc7db095000 r-xp 00000000 09:00 407742 /usr/lib/x86_64-linux-gnu/libtiff.so.5.2.6 7fc7db095000-7fc7db294000 ---p 00073000 09:00 407742 /usr/lib/x86_64-linux-gnu/libtiff.so.5.2.6 7fc7db294000-7fc7db298000 r--p 00072000 09:00 407742 /usr/lib/x86_64-linux-gnu/libtiff.so.5.2.6 7fc7db298000-7fc7db299000 rw-p 00076000 09:00 407742 /usr/lib/x86_64-linux-gnu/libtiff.so.5.2.6 7fc7db299000-7fc7db2c6000 r-xp 00000000 09:00 402900 /usr/lib/x86_64-linux-gnu/libgeotiff.so.2.1.2 7fc7db2c6000-7fc7db4c6000 ---p 0002d000 09:00 402900 /usr/lib/x86_64-linux-gnu/libgeotiff.so.2.1.2 7fc7db4c6000-7fc7db4cf000 r--p 0002d000 09:00 402900 /usr/lib/x86_64-linux-gnu/libgeotiff.so.2.1.2 7fc7db4cf000-7fc7db4d0000 rw-p 00036000 09:00 402900 /usr/lib/x86_64-linux-gnu/libgeotiff.so.2.1.2 7fc7db4d0000-7fc7db539000 r-xp 00000000 09:00 407739 /usr/lib/x86_64-linux-gnu/libjpeg.so.62.2.0 7fc7db539000-7fc7db739000 ---p 00069000 09:00 407739 /usr/lib/x86_64-linux-gnu/libjpeg.so.62.2.0 7fc7db739000-7fc7db73a000 r--p 00069000 09:00 407739 /usr/lib/x86_64-linux-gnu/libjpeg.so.62.2.0 7fc7db73a000-7fc7db73b000 rw-p 0006a000 09:00 407739 /usr/lib/x86_64-linux-gnu/libjpeg.so.62.2.0 7fc7db73b000-7fc7db743000 r-xp 00000000 09:00 415985 /usr/lib/x86_64-linux-gnu/libgif.so.7.0.0 7fc7db743000-7fc7db943000 ---p 00008000 09:00 415985 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/lib/x86_64-linux-gnu/libresolv-2.24.so 7fc812615000-7fc812616000 r--p 00013000 09:00 525331 /lib/x86_64-linux-gnu/libresolv-2.24.so 7fc812616000-7fc812617000 rw-p 00014000 09:00 525331 /lib/x86_64-linux-gnu/libresolv-2.24.so 7fc812617000-7fc812619000 rw-p 00000000 00:00 0 7fc812619000-7fc81261c000 r-xp 00000000 09:00 524607 /lib/x86_64-linux-gnu/libkeyutils.so.1.5 7fc81261c000-7fc81281b000 ---p 00003000 09:00 524607 /lib/x86_64-linux-gnu/libkeyutils.so.1.5 7fc81281b000-7fc81281c000 r--p 00002000 09:00 524607 /lib/x86_64-linux-gnu/libkeyutils.so.1.5 7fc81281c000-7fc81281d000 rw-p 00003000 09:00 524607 /lib/x86_64-linux-gnu/libkeyutils.so.1.5 7fc81281d000-7fc812828000 r-xp 00000000 09:00 396294 /usr/lib/x86_64-linux-gnu/libkrb5support.so.0.1 7fc812828000-7fc812a27000 ---p 0000b000 09:00 396294 /usr/lib/x86_64-linux-gnu/libkrb5support.so.0.1 7fc812a27000-7fc812a28000 r--p 0000a000 09:00 396294 /usr/lib/x86_64-linux-gnu/libkrb5support.so.0.1 7fc812a28000-7fc812a29000 rw-p 0000b000 09:00 396294 /usr/lib/x86_64-linux-gnu/libkrb5support.so.0.1 7fc812a29000-7fc812a2c000 r-xp 00000000 09:00 523328 /lib/x86_64-linux-gnu/libcom_err.so.2.1 7fc812a2c000-7fc812c2b000 ---p 00003000 09:00 523328 /lib/x86_64-linux-gnu/libcom_err.so.2.1 7fc812c2b000-7fc812c2c000 r--p 00002000 09:00 523328 /lib/x86_64-linux-gnu/libcom_err.so.2.1 7fc812c2c000-7fc812c2d000 rw-p 00003000 09:00 523328 /lib/x86_64-linux-gnu/libcom_err.so.2.1 7fc812c2d000-7fc812c5c000 r-xp 00000000 09:00 399415 /usr/lib/x86_64-linux-gnu/libk5crypto.so.3.1 7fc812c5c000-7fc812e5c000 ---p 0002f000 09:00 399415 /usr/lib/x86_64-linux-gnu/libk5crypto.so.3.1 7fc812e5c000-7fc812e5e000 r--p 0002f000 09:00 399415 /usr/lib/x86_64-linux-gnu/libk5crypto.so.3.1 7fc812e5e000-7fc812e5f000 rw-p 00031000 09:00 399415 /usr/lib/x86_64-linux-gnu/libk5crypto.so.3.1 7fc812e5f000-7fc812e60000 rw-p 00000000 00:00 0 7fc812e60000-7fc816e60000 rw-p 00000000 00:00 0 7fc816e80000-7fc816f80000 rw-p 00000000 00:00 0 7fc816f80000-7fc817049000 r-xp 00000000 09:00 396289 /usr/lib/x86_64-linux-gnu/libkrb5.so.3.3 7fc817049000-7fc817249000 ---p 000c9000 09:00 396289 /usr/lib/x86_64-linux-gnu/libkrb5.so.3.3 7fc817249000-7fc817257000 r--p 000c9000 09:00 396289 /usr/lib/x86_64-linux-gnu/libkrb5.so.3.3 7fc817257000-7fc81725a000 rw-p 000d7000 09:00 396289 /usr/lib/x86_64-linux-gnu/libkrb5.so.3.3 7fc81725a000-7fc8172a7000 r-xp 00000000 09:00 395322 /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2.10.7 7fc8172a7000-7fc8174a6000 ---p 0004d000 09:00 395322 /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2.10.7 7fc8174a6000-7fc8174a8000 r--p 0004c000 09:00 395322 /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2.10.7 7fc8174a8000-7fc8174a9000 rw-p 0004e000 09:00 395322 /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2.10.7 7fc8174a9000-7fc8174ab000 rw-p 00000000 00:00 0 7fc8174ab000-7fc8174f3000 r-xp 00000000 09:00 396284 /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2.2 7fc8174f3000-7fc8176f2000 ---p 00048000 09:00 396284 /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2.2 7fc8176f2000-7fc8176f4000 r--p 00047000 09:00 396284 /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2.2 7fc8176f4000-7fc8176f6000 rw-p 00049000 09:00 396284 /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2.2 7fc8176f6000-7fc817723000 r-xp 00000000 09:00 426662 /usr/lib/x86_64-linux-gnu/libpq.so.5.9 7fc817723000-7fc817923000 ---p 0002d000 09:00 426662 /usr/lib/x86_64-linux-gnu/libpq.so.5.9 7fc817923000-7fc817926000 r--p 0002d000 09:00 426662 /usr/lib/x86_64-linux-gnu/libpq.so.5.9 7fc817926000-7fc817927000 rw-p 00030000 09:00 426662 /usr/lib/x86_64-linux-gnu/libpq.so.5.9 7fc817927000-7fc817951000 r-xp 00000000 09:00 801908 /usr/local/env/lib/python2.7/site-packages/psycopg2/_psycopg.so 7fc817951000-7fc817b50000 ---p 0002a000 09:00 801908 /usr/local/env/lib/python2.7/site-packages/psycopg2/_psycopg.so 7fc817b50000-7fc817b51000 r--p 00029000 09:00 801908 /usr/local/env/lib/python2.7/site-packages/psycopg2/_psycopg.so 7fc817b51000-7fc817b57000 rw-p 0002a000 09:00 801908 /usr/local/env/lib/python2.7/site-packages/psycopg2/_psycopg.so 7fc817b57000-7fc817f58000 rw-p 00000000 00:00 0 7fc817f58000-7fc817f5c000 r-xp 00000000 09:00 422735 /usr/lib/python2.7/lib-dynload/termios.x86_64-linux-gnu.so 7fc817f5c000-7fc81815b000 ---p 00004000 09:00 422735 /usr/lib/python2.7/lib-dynload/termios.x86_64-linux-gnu.so 7fc81815b000-7fc81815c000 r--p 00003000 09:00 422735 /usr/lib/python2.7/lib-dynload/termios.x86_64-linux-gnu.so 7fc81815c000-7fc81815e000 rw-p 00004000 09:00 422735 /usr/lib/python2.7/lib-dynload/termios.x86_64-linux-gnu.so 7fc81815e000-7fc81845e000 rw-p 00000000 00:00 0 7fc81845e000-7fc818462000 r-xp 00000000 09:00 523677 /lib/x86_64-linux-gnu/libuuid.so.1.3.0 7fc818462000-7fc818661000 ---p 00004000 09:00 523677 /lib/x86_64-linux-gnu/libuuid.so.1.3.0 7fc818661000-7fc818662000 r--p 00003000 09:00 523677 /lib/x86_64-linux-gnu/libuuid.so.1.3.0 7fc818662000-7fc818663000 rw-p 00004000 09:00 523677 /lib/x86_64-linux-gnu/libuuid.so.1.3.0 7fc818663000-7fc818753000 r-xp 00000000 09:00 10214 /usr/local/env/lib/python2.7/site-packages/numpy/.libs/libgfortran-ed201abd.so.3.0.0 7fc818753000-7fc818952000 ---p 000f0000 09:00 10214 /usr/local/env/lib/python2.7/site-packages/numpy/.libs/libgfortran-ed201abd.so.3.0.0 7fc818952000-7fc818954000 rw-p 000ef000 09:00 10214 /usr/local/env/lib/python2.7/site-packages/numpy/.libs/libgfortran-ed201abd.so.3.0.0 7fc818954000-7fc818955000 rw-p 00000000 00:00 0 7fc818955000-7fc81895d000 rw-p 000f2000 09:00 10214 /usr/local/env/lib/python2.7/site-packages/numpy/.libs/libgfortran-ed201abd.so.3.0.0 7fc81895d000-7fc81ac71000 r-xp 00000000 09:00 9700 /usr/local/env/lib/python2.7/site-packages/numpy/.libs/libopenblasp-r0-39a31c03.2.18.so 7fc81ac71000-7fc81ae70000 ---p 02314000 09:00 9700 /usr/local/env/lib/python2.7/site-packages/numpy/.libs/libopenblasp-r0-39a31c03.2.18.so 7fc81ae70000-7fc81ae8f000 rw-p 02313000 09:00 9700 /usr/local/env/lib/python2.7/site-packages/numpy/.libs/libopenblasp-r0-39a31c03.2.18.so 7fc81ae8f000-7fc81aef2000 rw-p 00000000 00:00 0 7fc81aef2000-7fc81af88000 rw-p 02425000 09:00 9700 /usr/local/env/lib/python2.7/site-packages/numpy/.libs/libopenblasp-r0-39a31c03.2.18.so 7fc81af88000-7fc81b160000 r-xp 00000000 09:00 10087 /usr/local/env/lib/python2.7/site-packages/numpy/core/multiarray.so 7fc81b160000-7fc81b35f000 ---p 001d8000 09:00 10087 /usr/local/env/lib/python2.7/site-packages/numpy/core/multiarray.so 7fc81b35f000-7fc81b379000 rw-p 001d7000 09:00 10087 /usr/local/env/lib/python2.7/site-packages/numpy/core/multiarray.so 7fc81b379000-7fc81b391000 rw-p 00000000 00:00 0 7fc81b391000-7fc81b397000 rw-p 0096c000 09:00 10087 /usr/local/env/lib/python2.7/site-packages/numpy/core/multiarray.so 7fc81b397000-7fc81b417000 rw-p 00000000 00:00 0 7fc81b417000-7fc81b4d7000 rw-p 00000000 00:00 0 7fc81b4d7000-7fc81b6c3000 r--p 00000000 09:00 414939 /usr/lib/locale/locale-archive 7fc81b6c3000-7fc81b858000 r-xp 00000000 09:00 523353 /lib/x86_64-linux-gnu/libc-2.24.so 7fc81b858000-7fc81ba58000 ---p 00195000 09:00 523353 /lib/x86_64-linux-gnu/libc-2.24.so 7fc81ba58000-7fc81ba5c000 r--p 00195000 09:00 523353 /lib/x86_64-linux-gnu/libc-2.24.so 7fc81ba5c000-7fc81ba5e000 rw-p 00199000 09:00 523353 /lib/x86_64-linux-gnu/libc-2.24.so 7fc81ba5e000-7fc81ba62000 rw-p 00000000 00:00 0 7fc81ba62000-7fc81bb65000 r-xp 00000000 09:00 523979 /lib/x86_64-linux-gnu/libm-2.24.so 7fc81bb65000-7fc81bd64000 ---p 00103000 09:00 523979 /lib/x86_64-linux-gnu/libm-2.24.so 7fc81bd64000-7fc81bd65000 r--p 00102000 09:00 523979 /lib/x86_64-linux-gnu/libm-2.24.so 7fc81bd65000-7fc81bd66000 rw-p 00103000 09:00 523979 /lib/x86_64-linux-gnu/libm-2.24.so 7fc81bd66000-7fc81bd7f000 r-xp 00000000 09:00 525400 /lib/x86_64-linux-gnu/libz.so.1.2.8 7fc81bd7f000-7fc81bf7e000 ---p 00019000 09:00 525400 /lib/x86_64-linux-gnu/libz.so.1.2.8 7fc81bf7e000-7fc81bf7f000 r--p 00018000 09:00 525400 /lib/x86_64-linux-gnu/libz.so.1.2.8 7fc81bf7f000-7fc81bf80000 rw-p 00019000 09:00 525400 /lib/x86_64-linux-gnu/libz.so.1.2.8 7fc81bf80000-7fc81bf82000 r-xp 00000000 09:00 525343 /lib/x86_64-linux-gnu/libutil-2.24.so 7fc81bf82000-7fc81c181000 ---p 00002000 09:00 525343 /lib/x86_64-linux-gnu/libutil-2.24.so 7fc81c181000-7fc81c182000 r--p 00001000 09:00 525343 /lib/x86_64-linux-gnu/libutil-2.24.so 7fc81c182000-7fc81c183000 rw-p 00002000 09:00 525343 /lib/x86_64-linux-gnu/libutil-2.24.so 7fc81c183000-7fc81c186000 r-xp 00000000 09:00 523976 /lib/x86_64-linux-gnu/libdl-2.24.so 7fc81c186000-7fc81c385000 ---p 00003000 09:00 523976 /lib/x86_64-linux-gnu/libdl-2.24.so 7fc81c385000-7fc81c386000 r--p 00002000 09:00 523976 /lib/x86_64-linux-gnu/libdl-2.24.so 7fc81c386000-7fc81c387000 rw-p 00003000 09:00 523976 /lib/x86_64-linux-gnu/libdl-2.24.so 7fc81c387000-7fc81c39f000 r-xp 00000000 09:00 525327 /lib/x86_64-linux-gnu/libpthread-2.24.so 7fc81c39f000-7fc81c59e000 ---p 00018000 09:00 525327 /lib/x86_64-linux-gnu/libpthread-2.24.so 7fc81c59e000-7fc81c59f000 r--p 00017000 09:00 525327 /lib/x86_64-linux-gnu/libpthread-2.24.so 7fc81c59f000-7fc81c5a0000 rw-p 00018000 09:00 525327 /lib/x86_64-linux-gnu/libpthread-2.24.so 7fc81c5a0000-7fc81c5a4000 rw-p 00000000 00:00 0 7fc81c5a4000-7fc81c5c7000 r-xp 00000000 09:00 523309 /lib/x86_64-linux-gnu/ld-2.24.so 7fc81c5e8000-7fc81c6a8000 rw-p 00000000 00:00 0 7fc81c6d9000-7fc81c79d000 rw-p 00000000 00:00 0 7fc81c7c2000-7fc81c7c3000 rw-p 00000000 00:00 0 7fc81c7c3000-7fc81c7c4000 rwxp 00000000 00:00 0 7fc81c7c4000-7fc81c7c7000 rw-p 00000000 00:00 0 7fc81c7c7000-7fc81c7c8000 r--p 00023000 09:00 523309 /lib/x86_64-linux-gnu/ld-2.24.so 7fc81c7c8000-7fc81c7c9000 rw-p 00024000 09:00 523309 /lib/x86_64-linux-gnu/ld-2.24.so 7fc81c7c9000-7fc81c7ca000 rw-p 00000000 00:00 0 7ffd37268000-7ffd37289000 rw-p 00000000 00:00 0 [stack] 7ffd37296000-7ffd37298000 r--p 00000000 00:00 0 [vvar] 7ffd37298000-7ffd3729a000 r-xp 00000000 00:00 0 [vdso] ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall] Fatal Python error: Aborted
Current thread 0x00007fc81c799700
Confirmed. The segfault occurs inside the C lib after calling nc_get_vara with start,count values of
[11 0 0] and [ 5 75 110]. I will be out of town for a few days, but after that I'll try to write a C program to trigger the error.
Scratch that - the segfault is apparently not happening in nc_get_vara, it may actually be in the python code. It looks like it may have something to do with the _FillValue being set to NaN.
Not sure what it is about the file, but I can get a segfault trying to read it with nco also
ncks -v T_z300m_HHM -d time,11,16 -s '%g ' WN_L2_HHD_v7_UTM_TF1_UTC_2018-01.nc
It depends on the slice, 11:14 works, but 13:15 segfaults.
How was this file written? I suspect it is corrupted somehow.
The file was written using python's netCDF4 module. I just checked the way the data was written into the file structure and found out that at some point the code was very strange (don't ask me for what reason this was implemented like this):
placeholder = np.array(outfile.variables['varname'][x:y])
placeholder[:] = some_array
outfile.variables['varname'][x:y] = placeholder[:]
Changing this to the straightforward style like follows did the trick though, now it works fine!
outfile.variables['varname'][x:y] = some_array
OK, that's good to know. I'd still like to track down why your original code produced an apparently corrupted file. It would be very helpful if you could provide a test program that writes a file that then produces a segfault when read back in.