Thomas Dost

I have the same problem on my side Executing this command `ncbi-genome-download bacteria --section refseq -l complete` results in Directories that just contain the MD5 file 

`ncbi-genome-download --formats fasta,assembly-stats --assembly-levels complete bacteria` resullts in the same problem

[log.log](https://github.com/kblin/ncbi-genome-download/files/11628777/log.log) Executed command `ncbi-genome-download --formats fasta,assembly-stats --assembly-levels complete bacteria --debug &> log.log` @kblin Is this error reproducible on your side? If not I can try to dig into the python...

`ncbi-genome-download --genera "Vibrio fortis" --formats fasta,assembly-stats --assembly-levels complete bacteria --debug &> log.log` actually downloads "everything" 

Ahh ok, so I will first download all `MD5SUMS`? I did not know that. Is this documented somewhere? That might be the problem then. Is it acceptable to just do...

Also encountered this problem today. Can sb. tell me where exactly I have to apply the above-mentioned changes?. I assume somewhere in the conda env. which contains snakemake? Found it....

I also got this error right now

I get the same error on my side