slurmR
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USCbiostats
slurmR: A Lightweight Wrapper for Slurm
Hello everyone, When using sourceSlurm or slurmr via command line, and the R file contain the following sbatch directives > #!/bin/sh #SBATCH --job-name=simRMD #SBATCH --mem-per-cpu=10G #SBATCH --nodes=1 #SBATCH --ntasks=1 #SBATCH...
`libPaths` are not properly parsed into the rscript's library calls when using an `renv` project. The function `list_loaded_pkgs` attempts to parse package directory information passed from `sessionInfo()`, which for renv...
I am testing the slurmR package on my school HPC. Everything works great using the `Slurm_lapply` with `plan="none"` then `sbatch` call to launch the job array. However - I get...
The Slurm_lapply function fails, reporting job ids of NA, when run on a federated SLURM cluster. In this case the parallel slurm jobs were successfully started, but the parent process...
slurmR should identify whenever the job is being run within a job. If that's the case, the following variables should have the following defaults: - partition = `$SLURM_JOB_PARTITION` - account...
If the output cannot be coerced to a list of the same length, the default hook fails.
Hi, Using `doParallel` and the `foreach` construct we get the following error: ``` Warning: Permanently added 't077,10.12.0.77' (ECDSA) to the list of known hosts. /storage/apps/R/4.2.1/GNU/lib64/R/bin/exec/R: error while loading shared libraries:...
https://stackoverflow.com/questions/65402764/slurmr-trying-to-run-an-example-job-an-error-has-occurred-when-calling-silent I setup a slurm cluster and I can issue a srun -N4 hostname just fine. I keep seeing "silent_system2" errors. I've installed slurmR using devtools::install_github("USCbiostats/slurmR") I'm following the second...
Is it possible to include a toggle in the makeSlurmCluster function that would allow for the retention of the SLURM output file when calling makeSlurmCluster? I would like to be...
This is a part of the JOSS review outlined in https://github.com/openjournals/joss-reviews/issues/1493. Consider the following: ```r job1
