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IntendedFor still shows ".gz" when dcm2niix outputs uncompressed files

Open azabicki opened this issue 2 years ago • 0 comments

Hi there, thanks for your work and this nice and easy-to-use tool!

I think I found a bug which prevents the dataset from being validated successfully. When editing the dcm2niix options to save the data as uncompressed *.nii files ("dcm2niixOptions": "-b y -ba y -z n -f '%3s_%f_%p_%t'") and also using the "intendedFor": 0 option for fieldmaps, the parsed filename of the IntendedFor-Key in the json sidecar of the filemap still points to the compressed *.nii.gz file: "IntendedFor": "func/sub-cs_task-pointing_dir-AP_bold.nii.gz"

Best, Adam

azabicki avatar Sep 07 '22 05:09 azabicki