Sequence Analysis Bootcamp Winter 2023

This bootcamp intend to use UMMS Cluster and requires UMMS cluster account.

• If you haven't join into ViaFoundry/Dolphin Group, please follow steps in our ViaFoundry/Dolphin guide.

• Please join our slack channel to ask your questions. To learn how we use, please check How to use the Bootcamp Slack channel.

• Zoom link for the class: https://umassmed.zoom.us/j/6720894615?pwd=YTUwU29RWnJ0d3doUmFIY3A2TmFsdz09

1. Session 1: Linux environment

   Session 1.1: UMass Cluster (Optional)

   Session 1.2: Useful commands and tools (Optional)

   Session 1.3: Genomic resources

   Session 1.4: FASTA/FASTQ

   Session 1.5: SAM/BAM

2. Session 2: RNA-Seq data processing and analysis

3. Session 3: R and R Studio

4. Session 4: ViaFoundry Training - RNA-Seq Pipeline

5. Session 5: Differential expression analysis with DEBrowser

6. Session 6: scRNA-Seq Analysis