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Sparse arrays with NAs
The example below speaks for itself:
> library(scp)
> data("leduc_minimal", package = "scp")
> library(SparseArray)
> NaArray(assay(leduc_minimal))
<200 x 73 NaMatrix> of type "double" [nnacount=7182 (49%)]:
eAL00219RI5 eAL00219RI6 ... wAL00286RI17 wAL00286RI18
SAVEDEGLK NA NA . 11.01346 NaN
APNVVVTR 13.56997 13.85389 . 11.80130 11.45907
IVVVTAGVR NA NA . 12.68021 12.82554
GFQEVVTPNIFNSR 10.78733 9.36700 . NaN NaN
QLNNLALLCQNQGK NA NA . NA NA
... . . . . .
LTDQVMQNPR 10.292322 9.723388 . NA NA
LGAEVYHTLK 9.423704 8.523444 . NA NA
AANSLEAFIFETQDK NaN NaN . NaN NaN
FLLAVSRDR NA NA . 10.34729 10.51096
EASMVITESPAALQLR NA NA . NA NA
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