Install Request: MRtrix3 latest version - currently have 3.0RC3 [IN05765283] [IN05765775] [IN05842937]

[balston]

User needs commands that are only in the latest version. Note current version may also have a bug in it.

Build will need at least GNU 10.2 or similar and may need to wait for Spack to be available.

https://mrtrix.readthedocs.io/en/latest/installation/build_from_source.html

[balston]

Latest release is 3.0.4: https://github.com/MRtrix3/mrtrix3/archive/refs/tags/3.0.4.tar.gz

[balston]

Web already have the following dependencies available:

require gcc-libs/10.2.0
require compilers/gnu/10.2.0
require python3/3.9-gnu-10.2.0
require fftw/3.3.9/gnu-10.2.0

but don't have Eigen or Qt 5 for GNU 10.2.0.

[balston]

I've installed the latest Eigen (3.4.0) for use with GNU 10.2.0.

I'm not sure if the Qt toolkit is need to build command line MRtrix3 so will investigate this next.

[balston]

I've created a build script for V 3.0.4 which is the latest version without any Qt module loaded and ran it as follows:

cd /shared/ucl/apps/build_scripts
module -f unload compilers mpi gcc-libs
module load beta-modules
./mrtrix-3.0.4_nogui_install 2>&1 | tee ~/Software/MRtrix/mrtrix-3.0.4_nogui_install.log-1

It runs building MRtrix without errors and then fails running tests as the test script now needs to be passed an argument.

Will update the build script and rerun.

[balston]

Build script updated and re-run. Unit tests pass.

Will update the module file tomorrow.

[balston]

Updated module file now uploaded to Myriad. To access this version the following module commands should be used:

module -f unload compilers mpi gcc-libs
module load beta-modules
module load gcc-libs/10.2.0
module load compilers/gnu/10.2.0
module load python3/3.9-gnu-10.2.0
module load fftw/3.3.9/gnu-10.2.0
module load eigen/3.4.0/gnu-10.2.0
module load mrtrix/3.0.4/gnu-10.2.0/nogui

[balston]

The requestors have been informed.

[balston]

Updating on Kathleen ...

[balston]

Installed on Kathleen.