Tuomas Borman

I liked the previous one more (but if the mia logo could be with original colors)

What is the layout currently? Can you paste some pictures?

@antagomir I checked the layout and it is the green/yellow one. I liked the blue one more. Do you have any preferences?

But one thing to check if we decide to go with blue one, is the banner figure. --> Is it freely available?

We can try to find free figure for that later (I think it looked very nice), but I think this is good to go now

ONe option is to try generative AI tools

Yes, let's wait little bit. I am able currently in process of switching OMAs default from master to devel (and fixing some things related to build)

I think this is not critical. Also, some might think that it is better to load certain packages in chunk where they are used to higlihght the source of methods

Use calculateMDS https://rdrr.io/bioc/scater/man/runMDS.html

I think it is not wise to save anything, so we can just put eval=FALSE and show how it can be done. There is probably no informative message about saving...