trusat-backend

1. Intro
   1. trusat-config.yaml
   2. Environmental Variables
      1. MAILGUN_API_KEY
      2. MAILGUN_EMAIL_ADDRESS
      3. WEBSITE_ORIGINS
      4. SECRET_KEY
2. Code Style
3. Maintaining the Repo
4. Versioning
5. Configuring a Database
   1. Installing a Local Database
   2. Export data from AWS
   3. Import data to Local Database
6. Automated tests
7. Creating a Local Test Environment
   1. Download and Start MariaDB
   2. Use your SQL credentials to create the database
   3. Set up configurations for the server
   4. Initialize database tables
   5. Start the server with the following command
   6. Test that the server responds with a proper response
8. Recommended Server Setup
   1. Install nginx and python3
   2. Install virtual environment to run the python code
   3. Clone python code
   4. Start setting up python virtual environment
   5. Allow port 5000 access
   6. Download and start MariaDB
   7. Use your SQL credentials to create the database
   8. Set up configurations for the server
   9. Initialize database tables
   10. Start the server with the following command
   11. Test that the server responds with a proper response
   12. Kill the server and test gunicorn with the server
   13. Test that the server responds with a proper response
   14. Kill the server and leave the python environment
   15. Create service to start up gunicorn with wsgi.py
   16. Start service
   17. Create Nginx file
   18. Note, server_name needs to be the name you own
   19. Link trusat-backend
   20. Restart and configure the rest of nginx
   21. Change localhost with the domain name from above
   22. Create certificate

Introduction

This repo contains the code for deploying, populating and interacting with a TruSat database and its standard REST API.

The easiest way to test/exercise this code is by creating a trusat-config.yaml file (see below), setting the environmental variables, launching wsgi.py, and then using the snapshot tests to exercise the API and its underlying database.

Update trusat-config.yaml file

This should be a text file containing the parameters of the Database contructor - with one parameter on each line. At the time of writing that means:

# Trusat Database Connection Configuration
Database:
 name: "space"
 type:
 hostname: "127.0.0.1"
 username: "root"
 password:

Place the updated file in the parent directory of ./trusat-orbit to avoid commiting your sensitive data to GIT.

Environmental variables

MAILGUN_API_KEY

API key associated with a mailgun account. Without this, users cannot recover or create an account.

MAILGUN_EMAIL_ADDRESS

Email address that the mailgun API will use to send emails.

Example: [email protected]

WEBSITE_ORIGINS

Desired origins for the website REST API to accept from. This is currently required.

Example: https://trusat.org,https://www.trusat.org

SECRET_KEY

Secret bytes that will be used for flask security features. This can be generated using the following code:

import os
import base64
random_number = os.urandom(256)
random_number_base64 = base64.b64encode(random_number)

Example: 'ucCWKF7iqBqLNVoa6dS5Bc+mYYTecgcPg3Uv9nPP043hcdLPaE/UhBqqAChdytGifzeKzFl2bT4aN0B5xqEtEvB4CnkJIorgmnVhlrH3m663Fq7Uish32rH57AIeAtlZGo7L0OhYbNRPKewvlK0YfzUQt/I1Iaf/Duxa7SZ19c3cVgkzC9g4fKrhbE2TUXRnjpdFQY2I30SRwt3RYmRQRO2hSvstpIHtn5k3hFu71aQmS2ILFoyijksWyAC0eh4fgxJPmvfaGfexxiyHgAkv9bdWVzcdNeitld/glGJk7G4NquccJFozPqY3UqMg+ZLJzz36abe3gT5Yv/WAxNZlCQ=='

Coding Style

Follow PEP 8 for any Python code and the style guide recommended for any other language.

Maintaining Repo

Style Guide With the addition of commits to the master branch are done through PRs (Pull Request).

Releasing Versions

Modified from pyorbital

1. checkout master
2. pull from repo
3. run the unittests
4. create a tag with the new version number, starting with a 'v'. eg:

git tag v0.1.1 -m "Version 0.1.1 Version Numbering 5. push changes to github git push --follow-tags 7. check verification tools

Configuring a Database

Configuration of the database endpoint is done in the code that constructs the Database object in databse.py. Typically this is configured in flask_server.py.

You can use this code against our development and production databases at db.consensys.space (running in Amazon Relational Database Service (RDS), but in some cases, it may be preferable to develop against a local database.

Installing a local database

Install and configure mariadb on your local machine, run it and secure it. Instructions for MacOS here

Access mariadb using: mysql -u root -p (you will be prompted for your password). Then run CREATE DATABASE opensatcat_local; to create a test database.

Optional: create a non-root user for testing.

Export data from AWS

To export all (~200MB) data from the RDS database:

mysqldump -h db.consensys.space -u neil.mcclaren -p opensatcat > opensatcat_dump.sql

Replace neil.mcclaren with your db.consensys.space user. You will be prompted for a password.

If your user does not have LOCK permissions then you may need to add a --skip-lock-tables flag, e.g. mysqldump -h db.consensys.space -u neil.mcclaren --skip-lock-tables -p opensatcat > opensatcat_dump.sql)

Import data to local database

From the same directory that you did the export, import the data into your local DB by running:

mysql -u root -p opensatcat_local < opensatcat_dump.sql

Automated tests

These are a work in progress.

Run:

• Run pytest to run some snapshot tests.

  • These assume you are running an API server on your local machine and that it is pointing at a database identical to (a 2019-09-13 clone of) the "production" database.
  • The test makes some API requests, and compares each result to an expected result that's stored in the snapshots folder

• Run pytest with a -s or --durations 50 flag to add timing information to the output

• Run pytest --snapshot-update to update the snapshots if either the expected behavior or the underlying data changes.

Local Test Environment Setup

This requires python3 and yarn/npm (replace any yarn command with npm if applicable)

python3 -m pip install --user virtualenv
git clone https://github.com/TruSat/trusat-orbit
git clone https://github.com/TruSat/trusat-backend
cd trusat-backend
git clone https://github.com/TruSat/trusat-frontend

cd trusat-frontend
yarn install
export REACT_APP_API_ROOT="http://localhost:5000"
yarn build
cd ..

python3 -m virtualenv trusat-backend-env
source trusat-backend-env/bin/activate

pip install wheel gunicorn
pip install -r requirements.txt
pip install -r ../trusat-orbit/requirements.txt

Download and start MariaDB

For macOS:

brew install mariadb
mysql.server start
brew services start mariadb

For Ubuntu:

sudo apt update
sudo apt install mariadb-server
sudo systemctl status mariadb

Use your SQL credentials to create the database

NOTE: If mysql -u root doesn't work, you may need to use sudo. It is recommended to create a user that is separate from root.

mysql -u root

CREATE DATABASE space DEFAULT CHARACTER SET 'utf8';

Set up configurations for the server

Set up the following environmental variables to enable all features

export MAILGUN_API_KEY=''
export MAILGUN_EMAIL_ADDRESS=''
export WEBSITE_ORIGINS='http://localhost'
export SECRET_KEY=''

Add trusat-config.yaml to the parent directory with all the database connection information

# Trusat Database Connection Configuration
Database:
  name: "space"
  type: "sqlserver"
  hostname: "127.0.0.1"
  username: "newuser"
  password: "user_password"

Initialize database tables

python create_tables.py
python database_tools/categorize.py

Start the server with the following command

python wsgi.py

Test that the server responds with a proper response

if curl http://localhost:5000/heartbeat > HTML_Output
then echo "Request was successful"
else echo "Server did not set up correctly"
fi

(Make sure db accepts inbound of the IP (public and or internal)

Recommended Installation

Very helpful article on how to run trusat-backend with Nginx and gunicorn. Or feel free to follow the steps below

Install nginx and python3

sudo apt update
sudo apt install nginx
sudo apt install python3-pip python3-dev build-essential libssl-dev libffi-dev python3-setuptools

Install virtual environment to run the python code

python3 -m pip install --user virtualenv

Clone python code

git clone https://github.com/TruSat/trusat-orbit
git clone https://github.com/TruSat/trusat-backend
cd trusat-backend
git clone https://github.com/TruSat/trusat-frontend

Start setting up python virtual environment

python3 -m virtualenv trusat-backend-env
source trusat-backend-env/bin/activate

pip install wheel gunicorn
pip install -r requirements.txt
pip install -r ../trusat-orbit/requirements.txt

Allow port 5000 access

sudo ufw allow 5000

Download and start MariaDB

Download, start, and check MariaDB

sudo apt update
sudo apt install mariadb-server
sudo systemctl status mariadb

Use your SQL credentials to create the database

NOTE: If mysql -u root doesn't work, you may need to use sudo. It is recommended to create a user that is separate from root.

mysql -u root

Create the database

CREATE DATABASE space DEFAULT CHARACTER SET 'utf8';

When done, use the exit command. If you prefer a separate account, use the section below before exiting

(Optional) Create an account to use

CREATE USER 'newuser'@'localhost' IDENTIFIED BY 'user_password';
Select PASSWORD('user_password');

Use the string that is printed, starting with *, and paste it into the right side of the following command. Decide on the access this user will have or use the last command

SET PASSWORD FOR 'newuser'@'localhost' = '';
GRANT ALL ON *.* to newuser@localhost IDENTIFIED BY 'user_password';

Set up configurations for the server

Set up the following environmental variables to enable all features

export MAILGUN_API_KEY=''
export MAILGUN_EMAIL_ADDRESS=''
export WEBSITE_ORIGINS='http://localhost'
export SECRET_KEY=''

Add trusat-config.yaml to the parent directory with all the database connection information

# Trusat Database Connection Configuration
Database:
  name: "space"
  type: "sqlserver"
  hostname: "127.0.0.1"
  username: "newuser"
  password: "user_password"

(Make sure db accepts inbound of the IP (public and/or internal)

Initialize database tables

python create_tables.py
python database_tools/categorize.py

Start the server with the following command

python wsgi.py

Test that the server responds with a proper response

if curl http://localhost:5000/heartbeat > HTML_Output
then echo "Request was successful"
else echo "Server did not set up correctly"
fi

Kill the server and test gunicorn with the server

gunicorn --bind 0.0.0.0:5000 wsgi:app

Test that the server responds with a proper response

if curl http://localhost:5000/hearbeat > HTML_Output
then echo "Request successful"
else echo "Server did not set up correctly"
fi

Kill the server and leave the python environment

deactivate

Create service to start up gunicorn with wsgi.py

Use the following command and modify the file information to work with your system.

sudo vim /etc/systemd/system/trusat-backend.service

Example trusat-backend.service:

[Unit]
Description=Gunicorn instance to serve trusat-backend
After=network.target

[Service]
User=ubuntu
Group=www-data
WorkingDirectory=/home/ubuntu/trusat-backend
Environment="PATH=/home/ubuntu/trusat-backend/trusat-backend-env/bin"
ExecStart=/home/ubuntu/trusat-backend/trusat-backend-env/bin/gunicorn --workers 4 --bind unix:trusat-backend.sock -m 007 wsgi:app
Environment="SECRET_KEY="
Environment="MAILGUN_API_KEY="
Environment="MAILGUN_EMAIL_ADDRESS="
Environment="WEBSITE_ORIGINS="

[Install]
WantedBy=multi-user.target

Start service

sudo systemctl start trusat-backend
sudo systemctl enable trusat-backend
sudo systemctl status trusat-backend

Look for similar output:

ubuntu:~/trusat-backend$ sudo systemctl status trusat-backend
● trusat-backend.service - Gunicorn instance to serve trusat-backend
   Loaded: loaded (/etc/systemd/system/trusat-backend.service; enabled; vendor preset: enabled)
   Active: active (running) since Tue 2020-03-03 21:28:04 UTC; 13s ago
 Main PID: 24058 (gunicorn)
    Tasks: 5 (limit: 1152)
   CGroup: /system.slice/trusat-backend.service
           ├─24058 /home/ubuntu/trusat-backend/trusat-backend-env/bin/python /home/ubuntu/trusat-backend/trusat-backend-env/bin/gunicorn --workers 4 --bind unix:trusat-backend.sock -m 007 wsgi:app
           ├─24079 /home/ubuntu/trusat-backend/trusat-backend-env/bin/python /home/ubuntu/trusat-backend/trusat-backend-env/bin/gunicorn --workers 4 --bind unix:trusat-backend.sock -m 007 wsgi:app
           ├─24080 /home/ubuntu/trusat-backend/trusat-backend-env/bin/python /home/ubuntu/trusat-backend/trusat-backend-env/bin/gunicorn --workers 4 --bind unix:trusat-backend.sock -m 007 wsgi:app
           ├─24081 /home/ubuntu/trusat-backend/trusat-backend-env/bin/python /home/ubuntu/trusat-backend/trusat-backend-env/bin/gunicorn --workers 4 --bind unix:trusat-backend.sock -m 007 wsgi:app
           └─24082 /home/ubuntu/trusat-backend/trusat-backend-env/bin/python /home/ubuntu/trusat-backend/trusat-backend-env/bin/gunicorn --workers 4 --bind unix:trusat-backend.sock -m 007 wsgi:app

Mar 03 21:28:04 systemd[1]: Started Gunicorn instance to serve trusat-backend.
Mar 03 21:28:04 gunicorn[24058]: [2020-03-03 21:28:04 +0000] [24058] [INFO] Starting gunicorn 20.0.4
Mar 03 21:28:04 gunicorn[24058]: [2020-03-03 21:28:04 +0000] [24058] [INFO] Listening at: unix:trusat-backend.sock (24058)
Mar 03 21:28:04 gunicorn[24058]: [2020-03-03 21:28:04 +0000] [24058] [INFO] Using worker: sync
Mar 03 21:28:04 gunicorn[24058]: [2020-03-03 21:28:04 +0000] [24079] [INFO] Booting worker with pid: 24079
Mar 03 21:28:04 gunicorn[24058]: [2020-03-03 21:28:04 +0000] [24080] [INFO] Booting worker with pid: 24080
Mar 03 21:28:04 gunicorn[24058]: [2020-03-03 21:28:04 +0000] [24081] [INFO] Booting worker with pid: 24081
Mar 03 21:28:04 gunicorn[24058]: [2020-03-03 21:28:04 +0000] [24082] [INFO] Booting worker with pid: 24082

Create Nginx file

sudo vim /etc/nginx/sites-available/trusat-backend

Note, server_name needs to be the name you own

server {
    listen 80;
    server_name trusat.org www.trusat.org;

    location / {
        include proxy_params;
        proxy_pass http://unix:/home/ubuntu/trusat-backend/trusat-backend.sock;
    }
}

Link trusat-backend

sudo ln -s /etc/nginx/sites-available/trusat-backend /etc/nginx/sites-enabled
sudo nginx -t

The test should look similar to below

ubuntu:~/trusat-backend$ sudo nginx -t
nginx: the configuration file /etc/nginx/nginx.conf syntax is ok
nginx: configuration file /etc/nginx/nginx.conf test is successful

Restart and configure the rest of nginx

sudo systemctl restart nginx
sudo ufw delete allow 5000
sudo ufw allow 'Nginx Full'

Change localhost with the domain name from above

if curl http://localhost/hearbeat > HTML_Output
then echo "Request successful"
else echo "Server did not set up correctly"
fi

Create certificate

Don't forget to create a DNS record

sudo add-apt-repository ppa:certbot/certbot
sudo apt install python-certbot-nginx
sudo certbot --nginx -d trusat.org -d www.trusat.org
sudo ufw delete allow 'Nginx HTTP'