Last nucleotide of sequence not being annotated

Open DanielOlson opened this issue 2 years ago • 0 comments

In sequences like:

DF0000002 avg_kimura=4.26 [aluy] GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGA TCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAA AAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGG CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGC CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA AAAAAAAAAAA

The last nucleotide is not annotated. It seems to be a combination of problems in CalculateTraceback() and GetNextRepeat().

Jun 01 '23 22:06 DanielOlson