itol.toolkit

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itol.toolkit--Color_Palette function

1

Hello, I tried to assign a color to the tree. When I used the following code, I kept getting prompted: Error: Object 'Phylum_color' not found. I compared the sample file...

makerer5

Trying to annotate using colorstrips: Error in COLOURS[[n]] : subscript out of bounds

2

I am trying to annotate my tree using colorstrip. There are 47 different strains in my tree. So, I need to give 47 colors to my tree based on the...

Shyamili09

The single column input problem

1

**Describe the bug** > unit_2 % select(tips_ID, log2_genome), key = "GTDB unssaigned LV", type = "DATASET_GRADIENT", tree = tree_f) Using the first column as id: tips_ID Error in UseMethod("tbl_vars") :...

yuxiangtan

Problems changing names for internal nodes

3

Hi Dr. Zhou There is an example of renaming a leaf node in https://tongzhou2017.github.io/itol.toolkit/articles/LABELS.html, but can I use the "LABELS" module in itol.toolkit to rename the internal nodes of a...

wanxn518

Problems encountered during operation

3

Hi Dr. Zhou  Thank you very much for the great tool you have developed, I am running with this error and I don't know what to do, can you...

wanxn518

How to get the tree for bins

1

Dear Sir Results from iCAMP dont provide the tree for bins, How to recluster from the original tree file to get the bin tree file. Sincerely

diego00012138

error when I save hubs

7

I got an error when I run the function 'write_hub' function in R3.6.1.  However, the files are exported normally in the folder. However, in this case, the "DATASET_HEATMAP" annotation...

muyixu