Tom Conlin

Hi Suzi unfortunately not so clear, but an opportunity anyway. This is the official syntax of a Skolemised blank node in the abstract: https://en.wikipedia.org/wiki/Skolem_normal_form concrete implementation: https://www.w3.org/TR/rdf11-concepts/ I not attempting...

in RDF turtle ":" (the empty curie prefix) is shorthand for the default base IRI so `:.well-known/genid/NCBIGene5435product` and `https://monarchinitiative.org/.well-known/genid/NCBIGene5435product` are equivalent I do not know where you have a parameter...

Does this leave the thousands of remaining PHENOTYPE IRIs not on this list supported?

should move to https://github.com/monarch-initiative/monarch-cypher-queries

Is there also a front end conservation such as where these induced variants should go?

If you are changing "hallmark" to a different word we are passing along as a literal it should not matter. If you are changing the column hallmark is currently in...

TC> where do these (objects) come from... SK> I was wondering why they don't have labels as the other have. Do you know that? likely red herring. they would, I...

cmaps files are how @mbrush introduced me to the monarch semantic models and (currently) serve as my primary reference when I am writing or editing an ingest script. Although cmaps...

No. The only change ids that *cough*someone*cough* added yet another pseudo predicate that requires a proper ontological term that no one seems ready to make. ``` 79454 135 729 ```

What default ontological term would replace "has_phenotype" in a theoretical sibling `G2DAssoc` class? - "contributes to" - "involved in" - "causally_influences" - "causes_or_contributes" - "causes condition" - ... others I...