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⚡ Improve `Engine` Performance and Implementation

Open shaneahmed opened this issue 1 year ago • 1 comments

  • Improve Engines performance and implementation
  • Redesigns PatchPredictor engine using the new EngineABC base class.
  • The WSIs are now processed using the same code as for the processing the patches using WSI based dataloader.
  • The intermediate output is saved as zarr for the WSIs to resolve memory issues.
  • The output of model architectures should now be a dictionary.
  • The output can be specified as AnnotationStore for visualisation using TIAViz.

shaneahmed avatar Mar 31 '23 09:03 shaneahmed